https://github.com/AllenInstitute/patchseqtools
Tip revision: d1afcd4d5203564979a29f2891e03cba7733b726 authored by Agata Budzillo on 30 July 2021, 06:36:43 UTC
Add files via upload
Add files via upload
Tip revision: d1afcd4
qcPlot.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/CCA_wrappers.r
\name{qcPlot}
\alias{qcPlot}
\title{Make QC plots}
\usage{
qcPlot(anno, dendcluster_anno, name, scaleLimits = c(-5000, 12000),
scaleBreaks = seq(0, 12000, 2000), scaleLabels = seq(0, 12, 2),
ylab = "value", fileName = gsub("\\\\.", "_", gsub("_label", "",
name)), outputFolder)
}
\arguments{
\item{anno}{Annotation data frame for patch-seq}
\item{dendcluster_anno}{what to cluster by}
\item{scaleLimits}{scaleLimits}
\item{scaleBreaks}{scaleBreaks}
\item{scaleLabels}{scaleLabels}
\item{ylab}{ylab}
\item{fileName}{fileName}
\item{groupvars}{what to group by}
}
\value{
the plot is returned
}
\description{
Makes QC plots
}