https://github.com/CFSAN-Biostatistics/snp-pipeline
Tip revision: 065e93a7d966c8534b77b6d9de26dd350cebc35d authored by Justin Payne on 05 May 2023, 03:45:32 UTC
bugfixes, trying to improve Conda support
bugfixes, trying to improve Conda support
Tip revision: 065e93a
Makefile
.PHONY: test clean-pyc clean-build docs clean
help:
@echo "clean - remove all build, test, coverage and Python artifacts"
@echo "clean-build - remove build artifacts"
@echo "clean-pyc - remove Python file artifacts"
@echo "clean-test - remove test and coverage artifacts"
@echo "lint - check style with flake8"
@echo "test - run tests quickly with the default Python"
@echo "test-all - run tests on every Python version with tox"
@echo "coverage - check code coverage quickly with the default Python"
@echo "docs - generate Sphinx HTML documentation, including API docs"
@echo "release - package and upload a release"
@echo "dist - package"
@echo "install - install the package to the active Python's site-packages"
clean: clean-build clean-pyc clean-test
clean-build:
rm -fr build/
rm -fr dist/
rm -fr .eggs/
find . -name '*.egg-info' -exec rm -fr {} +
find . -name '*.egg' -exec rm -f {} +
clean-pyc:
find . -name '*.pyc' -exec rm -f {} +
find . -name '*.pyo' -exec rm -f {} +
find . -name '*~' -exec rm -f {} +
find . -name '__pycache__' -exec rm -fr {} +
clean-test:
rm -fr .tox/
rm -f .coverage
rm -fr htmlcov/
lint:
flake8 snppipeline test
test:
python setup.py test
test-all:
tox
coverage:
coverage run --source snppipeline setup.py test
coverage report -m
coverage html
open htmlcov/index.html
docs:
$(MAKE) -C docs clean
$(MAKE) -C docs html
xdg-open docs/_build/html/index.html
release: clean
python setup.py sdist upload
dist: clean
python setup.py sdist
ls -l dist
install: clean
python setup.py install