https://github.com/DIPnet/fimsR-access
Tip revision: 7fbdae7cdd604e10b3da622fd94af503d58b839b authored by John Deck on 12 November 2022, 01:27:00 UTC
Update README.md
Update README.md
Tip revision: 7fbdae7
NEWS.md
# geomedb 2.1
This release fixes some package check issues and broken documentation links
# geomedb 2.0
This release adds functionality for fetching fastq files in R from the SRA
* `listMarkers` renamed to `listLoci`
* `queryFasta` renamed to `querySanger`
* `fastqDump`: Download or convert fastq data from NCBI Sequence Read Archive in a single thread (Windows compatible)
* `fasterqDump`: Download or convert fastq data from NCBI Sequence Read Archive using multiple threads
* `prefetch`: Download data from NCBI Sequence Read Archive in .sra format using FASP or HTTPS protocols
# geomedb 1.0
This is a major release, which updates the package to work with the latest [GeOMe](https://geome-db.org) changes.
* queryMetadata:
* query across multiple project & all data in GeOMe
* query syntax has changed and now resembles SQL
* query results are returned for each entity. No longer a flat table representation