https://github.com/MICA-MNI/BrainSpace
Tip revision: 1fb001f4961d3c0b05b7715f42bcc362b31b96a5 authored by Reinder Vos de Wael on 16 January 2021, 02:13:20 UTC
Merge pull request #29 from MICA-MNI/joint_fix
Merge pull request #29 from MICA-MNI/joint_fix
Tip revision: 1fb001f
CHANGELOG.txt
Hotfix, January 2021 -- MATLAB Joint Alignment
MATLAB:
- Fixed faulty dimensionality extraction in joint alignment of asymmetric
matrices.
v0.1.1, March 2020 -- Quality of life update
MATLAB:
- New functionality:
- split_surfaces.m
- surface_to_graph.m
- load_group_mpc.m
- Bug fixes:
- Fixed a bug where the example data loaders failed when the BrainSpace
directory was not named "BrainSpace".
- Matrix sparsification now correctly thresholds -inf.
- The "Running with sparsity parameter..." message will now correctly
display with every kernel.
- Fixed a bug where joint embedding of non-square matrices would fail.
- plot_hemispheres will no longer error when using non-float data.
- Other changes:
- Optimized the spin_permutation code. It should now run substantially
faster, especially with a large number of permutations.
- Improved several warning/error messages.
- Moved execution of custom kernels to after the sparsification.
Python:
- gradient:
- Fix bug in alignment (remove centering and scaling)
- Add support for procrutes alignment of one subject to reference in
GradientMaps
- Remove dependency on _graph_is_connected from scikit-learn
- datasets:
- Add load_group_mpc
- mesh:
- Update build_polydata with new vtk_interface
- Add downsample_with_parcellation to mesh_operations
- Fixed a bug with mask for smooth_array and add support for
multicomponent arrays (columns). Smooth columns separately.
- parcellation
- Fixed a bug in find_label_correspondence
- plotting:
- Add plotting defaults
- Add build_plotter
- Update plot_surf
- Remove numpy warning plot_hemispheres
- vtk_interface:
- Reorganize and add several wrappers
- Update wrap_vtk to look for superclasses is BS wrapper doesn't exist
- Add support for vtkSringArray and vtkVariantArray
- Add vtype kwarg in decorators for unwarpping numpy to vtk abstractarray
- Add support for dict arguments
- Add automatic wrap/unwrap output/input of vtk methods
- Add new repr
- Add wrappers BSActor2D, BSScalarBarActor, BSTexturedActor2D, BSTextActor
- Add AddScalarBarActor and AddTextActor methods for BSViewport
- Add io_support from mesh here
- tests:
- Update tests with new vtk_interface
- requiremnts:
- Update to scikit-learn>=0.22.0
- Remove pillow
ReadTheDocs:
- Added matrix fusion example to MATLAB tutorial 2.
v0.1.0, September 2019 -- Initial release