https://github.com/Malfoy/BGREAT
Tip revision: f68b9454bf0eb3ba694fd7930c03f72f5559dd8d authored by Antoine Limasset on 04 April 2017, 11:42:06 UTC
Update README.md
Update README.md
Tip revision: f68b945
convertOneLineFasta.py
#!/usr/bin/env python
import sys
sequence = ""
with open(sys.argv[1]) as infile: # do not load the whole file, one line at time
for line in infile:
string = line.rstrip()
if ">" not in string:
sequence += string
else:
if sequence != "":
print sequence
print string
sequence = ""
print sequence
# lines = [line.rstrip() for line in open(sys.argv[1], "r")]
# i = 0
# sequence = ""
# while i < len(lines):
# string = lines[i]
# if ">" not in string:
# sequence += string
# else:
# if sequence != "":
# print sequence
# print string
# sequence = ""
# i += 1
# print sequence