.. drep documentation master file, created by
   sphinx-quickstart on Tue Jan 31 20:39:36 2017.
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dRep
====

Rapid and accurate comparison and de-replication of microbial genomes
-----------------------------------

The publication is available at ISME_ and an open-source pre-print is available on bioRxiv_.

Source code is `available on GitHub
<https://github.com/MrOlm/drep>`_.

See links to the left for :doc:`installation` and :doc:`quick_start` instructions

Comments and suggestions can be sent to `Matt Olm <mattolm@berkeley.edu>`_

Bugs reports and feature requests can be submitted through `GitHub
<https://github.com/MrOlm/drep/issues>`_.



Contents
--------

.. toctree::
   :maxdepth: 2

   overview
   installation
   quick_start
   example_output
   choosing_parameters
   module_descriptions
   advanced_use
   source/drep

.. _bioRxiv: https://doi.org/10.1101/108142
.. _ISME: http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej2017126a.html