https://github.com/bigdelys/pre_ICA_cleaning
Raw File
Tip revision: 7dcb056c36d2c6d0881f5fa6163dd4d5a066d854 authored by Nima Bigdely-Shamlo on 01 August 2017, 19:48:08 UTC
after LARg pipeline
Tip revision: 7dcb056
geometric_median.m
function y = geometric_median(X,tol,y,max_iter)
% Calculate the geometric median for a set of observations (mean under a Laplacian noise distribution)
% This is using Weiszfeld's algorithm.
%
% In:
%   X : the data, as in mean
%   tol : tolerance (default: 1.e-5)
%   y : initial value (default: median(X))
%   max_iter : max number of iterations (default: 500)
%
% Out:
%   g : geometric median over X

% Copyright (C) Christian Kothe, SCCN, 2012, ckothe@ucsd.edu
%
% This program is free software; you can redistribute it and/or modify it under the terms of the GNU
% General Public License as published by the Free Software Foundation; either version 2 of the
% License, or (at your option) any later version.
%
% This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
% even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
% General Public License for more details.
%
% You should have received a copy of the GNU General Public License along with this program; if not,
% write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307
% USA

if ~exist('tol','var') || isempty(tol)
    tol = 1.e-5; end
if ~exist('y','var') || isempty(y)
    y = median(X); end
if ~exist('max_iter','var') || isempty(max_iter)
    max_iter = 500; end

for i=1:max_iter
    invnorms = 1./sqrt(sum(bsxfun(@minus,X,y).^2,2));
    [y,oldy] = deal(sum(bsxfun(@times,X,invnorms)) / sum(invnorms),y);
    if norm(y-oldy)/norm(y) < tol
        break; end
end
back to top