https://github.com/brilraven/ZebrafishMotionCues
Tip revision: c29e728853d71d06bf643ea28d38c320f1976dd4 authored by brilraven on 12 July 2018, 20:49:54 UTC
updated link to paper
updated link to paper
Tip revision: c29e728
PackagesAndGlobalSettings.txt
# ---- data prep/wrangling
library(tidyverse)
library(lubridate)
# ---- stats & plots
library(nlme) # Linear Mixed-Models
library(lme4) # Genearlized Linear Mixed-Models
library(predictmeans) # Cook's Distance from lme object
library(multcomp) # Multiple comparisons
library(minpack.lm) # fitting nonlinear models
# ---- plotting
library(grid) # for ggplot's 'unit' - used to scale legend's text
library(gridExtra) # for ggplot's 'unit' - used to scale legend's text
library(splines) # for manual model fitting of residuals
theme_set(theme_bw())
# plotting - color bind friendly palettes: http://www.cookbook-r.com/Graphs/Colors_(ggplot2)/
cbbPalette <- c("#000000", "#E69F00", "#56B4E9", "#009E73", "#F0E442", "#0072B2", "#D55E00", "#CC79A7")
# default colors for speed levels
cols1 <- cbbPalette[6]
cols10 <- cbbPalette[7]