https://github.com/combogenomics/rhizoreg
Tip revision: 1a4e3c93b80528b764f829ac7e50f07592e2550c authored by Marco Galardini on 14 March 2015, 10:21:57 UTC
README updated
README updated
Tip revision: 1a4e3c9
literature_AK75_XylR.tab
contig_40 + 9072 9094 ATTGCTCCACACCGTGAAATAGG 1 XylR
contig_494 - 10461 10483 TTTTGTTTCGAAATCGATTAAAT 1 XylR
SMAK75_005457 contig_494 + 14672 14694 + -226 -204 CTTTTTTTACCCCTGAATTTTAG 1 XylR
contig_579 - 11517 11539 CTTATTCCAGTATCCGGAGACAG 1 XylR
contig_579 + 11558 11580 TCTTTTTTAGGCCGGGAGAACAA 1 XylR
SMAK75_003050 contig_273 + 12761 12783 - -527 -505 AATACTTTATAATCCGAAATAAC 1 XylR
SMAK75_003051 contig_273 - 12761 12783 - -268 -246 GTTATTTCGGATTATAAAGTATT 1 XylR
contig_631 - 7281 7303 AGAGTTCCGCGATTCGGAGAAAA 1 XylR
contig_497 - 7714 7736 TTTTCTTCTGAAGCTGAATTTAT 1 XylR
SMAK75_006611 contig_605 - 3604 3626 + -126 -104 GTTACTCTAAGGTTTAAGGATAG 1 XylR
SMAK75_006612 contig_605 - 3604 3626 - -219 -197 GTTACTCTAAGGTTTAAGGATAG 1 XylR
contig_473 - 3548 3570 TTAGCTTCTCTGAGTAAAGAAAG 1 XylR
contig_674 - 6419 6441 CTTTCTTTCCGCCGGAAAAACAG 1 XylR
contig_371 + 7806 7828 ATTTTCCCCATCCCCAAAAATCA 1 XylR
contig_374 + 9871 9893 TTCTTCTCGAGCGTCGAGTTGAT 1 XylR
contig_374 + 18663 18685 TTAGATTGGCGGTCGAAAGAAAG 1 XylR
contig_374 - 20994 21016 TGAATTTCGATGCCGAAGTTTAA 1 XylR
SMAK75_004186 contig_377 - 5461 5483 - -160 -138 TATATCTTAATGCTTGCGTAAAA 1 XylR
SMAK75_004185 contig_377 - 5461 5483 + -403 -381 TATATCTTAATGCTTGCGTAAAA 1 XylR
contig_377 - 6589 6611 ATTTTTCGGAACTGTGAGAAAAC 1 XylR
SMAK75_004187 contig_377 + 7065 7087 - -177 -155 TTTGTTCCAAGAGCGGGAGCAAA 1 XylR
contig_377 + 19401 19423 CTTATTCCGCGCTGCAGGAAAAC 1 XylR
contig_377 + 22410 22432 TCAAATTCGAGATCGAAGGTAAG 1 XylR
SMAK75_004218 contig_377 + 40812 40834 - -32 -10 CTTTTCTTCGTTTGTGAAGGAAT 1 XylR
contig_8 + 2446 2468 ATATATTTCAGTATGCGAAATAT 1 XylR
contig_260 - 9710 9732 CTCGTCCTGAATCGCGAAAATAT 1 XylR
SMAK75_005018 contig_461 + 127 149 - -81 -59 TTTTATATCGAAAGCGATTAAAT 1 XylR
SMAK75_005019 contig_461 - 127 149 - -122 -100 ATTTAATCGCTTTCGATATAAAA 1 XylR
SMAK75_005018 contig_461 - 213 235 + -167 -145 GTTGTCGTGCCCACTAAAATAAA 1 XylR
SMAK75_005019 contig_461 + 213 235 + -36 -14 TTTATTTTAGTGGGCACGACAAC 1 XylR
contig_181 + 7163 7185 GTGGATTCGACCCTCGAAGAATT 1 XylR
contig_465 + 2356 2378 AGTATTTTCACAGCCGGATAAAC 1 XylR
contig_465 + 12058 12080 TTTGTCTCGGTTGGTGACGAAAT 1 XylR
SMAK75_005103 contig_465 + 42524 42546 - -60 -38 TTTTACTCGCCTGAGGAGCTAAT 1 XylR
SMAK75_005105 contig_465 + 43243 43265 - -99 -77 TTTCATCTGGTCACTAAAGATAA 1 XylR
SMAK75_005106 contig_465 + 43243 43265 + -379 -357 TTTCATCTGGTCACTAAAGATAA 1 XylR
SMAK75_005105 contig_465 - 43528 43550 + -384 -362 TTTGTCTCCTCTGCGGGATTTAA 1 XylR
contig_465 + 57271 57293 GTATCTTCGGGAGTGAAGGTTAT 2 XylR
contig_465 - 80636 80658 TTTGCCTCCATATCCAAAAGAAG 1 XylR
contig_465 - 94047 94069 TTTACCTCTAAGATTGAGAAAAT 2 XylR
contig_465 + 99681 99703 ATTTCGTTGATGGGCGAGTAAAA 3 XylR
contig_465 + 106017 106039 GTAACTCTTCTGTCCGAGATAAT 1 XylR
SMAK75_005179 contig_465 - 109398 109420 - -336 -314 TGAAGTTTGAATCGCGGAAAAAT 1 XylR
SMAK75_005178 contig_465 + 109398 109420 - -69 -47 ATTTTTCCGCGATTCAAACTTCA 1 XylR
contig_187 + 1529 1551 ATATTTCTCCGAGGCGAAATTCT 1 XylR
contig_184 + 209 231 ATTGTCTCCGCCCTCAGATATGT 1 XylR
contig_185 + 10486 10508 TGAGACTTGAAGCGCAAAGTTAA 1 XylR
contig_185 - 11686 11708 ATTACCTTGGATCCCAAAGAAGT 1 XylR
SMAK75_002223 contig_185 + 15320 15342 + -51 -29 TTTAATTAAGCTAACGGAATAAA 1 XylR
SMAK75_002223 contig_185 + 15321 15343 + -50 -28 TTAATTAAGCTAACGGAATAAAG 1 XylR
SMAK75_002225 contig_185 - 20026 20048 + -53 -31 TTATTTCAGGTTCCGGAATATAT 1 XylR
SMAK75_002226 contig_185 - 20026 20048 - -346 -324 TTATTTCAGGTTCCGGAATATAT 1 XylR
SMAK75_002225 contig_185 - 20027 20049 + -54 -32 ATTATTTCAGGTTCCGGAATATA 3 XylR
SMAK75_002226 contig_185 + 20027 20049 + -345 -323 TATATTCCGGAACCTGAAATAAT 3 XylR
SMAK75_006396 contig_585 - 15559 15581 - -154 -132 ATTAATTCGTTATTGAAATTAAA 2 XylR
SMAK75_006396 contig_585 + 15560 15582 + -153 -131 TTAATTTCAATAACGAATTAATT 1 XylR
SMAK75_006338 contig_582 - 771 793 - -222 -200 CTTTTTTTGCAACCATAAATTAG 1 XylR
contig_582 - 6002 6024 ATCCATTTGCGGTTCGAAGAAAC 1 XylR
SMAK75_006343 contig_582 - 7437 7459 + -182 -160 TTCATTCCGATAGCGGAGGAAAC 1 XylR
SMAK75_006354 contig_582 - 13734 13756 - -279 -257 ATGATTTCAATTTTCGGGTTAAG 1 XylR
contig_344 + 1680 1702 ATATTCATCACGAGGGAGAAAAT 1 XylR
contig_589 - 9732 9754 TTTTCCTCGCCCTCCGGCAAAAT 2 XylR
SMAK75_006763 contig_621 + 3437 3459 + -90 -68 ATTTTTTCAACCCATGAAAATTA 1 XylR
SMAK75_006763 contig_621 - 3438 3460 - -89 -67 ATAATTTTCATGGGTTGAAAAAA 1 XylR
contig_454 - 5883 5905 ATTATCTCCGGCAGGAGAAATAC 2 XylR
contig_454 + 10446 10468 CTTTATTCGCTGACCAAATATGT 1 XylR
contig_457 - 1029 1051 TTTAATTCAAAGCGTGAGATCAG 1 XylR
contig_217 - 2119 2141 ATCAATTCGCCCTTCGGAATGAT 1 XylR
contig_214 - 452 474 CTTAATCCACTGTTCACCATAAA 1 XylR
contig_214 + 559 581 ATTAACCCTGATACCAATAAAAT 1 XylR
contig_214 - 878 900 TTTACCTCCAAATGAAGAAATAA 1 XylR
contig_214 + 879 901 TATTTCTTCATTTGGAGGTAAAA 1 XylR
contig_198 - 13337 13359 ATAACCCTGCGGCTCAAAACTAC 2 XylR
contig_596 + 2717 2739 AATCACTCCCGCGCCGAAATAAA 1 XylR
contig_591 - 8377 8399 TTTATGTCGAAGTGGAAAAAGAA 1 XylR
contig_590 + 2854 2876 TTATACCTACAACCCGAAGATCA 1 XylR
contig_592 - 4183 4205 ATTATCTCGAGCGCAAAGAATAT 1 XylR
contig_72 - 18985 19007 ATAGATGTACATGGCAAAGAAAT 1 XylR
contig_112 + 1159 1181 CTTGACCCAATAGCCGAGATAGA 1 XylR
SMAK75_001440 contig_112 - 11653 11675 + -33 -11 CTACTCTTCCCTGTCAGAATAAG 1 XylR
contig_112 - 17661 17683 TTTTTCTTGAACAGTCCAAAAAT 1 XylR
SMAK75_006572 contig_599 + 4282 4304 + -215 -193 CTTTTCTCCATTCTTGCGATTAT 1 XylR
contig_297 - 5408 5430 TTCTCTTCGGCTACTGGGAATAT 1 XylR
SMAK75_003235 contig_294 - 5470 5492 + -177 -155 ATAATTTCAAATATAAATTATAA 1 XylR
SMAK75_003236 contig_294 + 5470 5492 + -259 -237 TTATAATTTATATTTGAAATTAT 1 XylR
contig_74 + 6835 6857 TTTTTCTCGCAGCGTGGAATCAC 1 XylR
contig_74 + 10786 10808 TTCACCTCGCGGCTCAAGAGAAT 1 XylR
SMAK75_000995 contig_74 + 39121 39143 - -34 -12 TTTATATCAGAACTTGTATAAAC 1 XylR
SMAK75_000996 contig_74 + 39121 39143 + -39 -17 TTTATATCAGAACTTGTATAAAC 1 XylR
contig_74 + 44479 44501 TTTTCTCTAAGACTCAGGTCTAT 1 XylR
SMAK75_001009 contig_74 + 51458 51480 - -403 -381 TTTTACGCAAGCATTAAGATATA 1 XylR
SMAK75_001010 contig_74 - 51458 51480 - -160 -138 TATATCTTAATGCTTGCGTAAAA 1 XylR
contig_74 - 52586 52608 ATTTTTCGGAACTGTGAGAAAAC 1 XylR
SMAK75_001011 contig_74 - 53062 53084 + -177 -155 TTTGCTCCCGCTCTTGGAACAAA 1 XylR
contig_74 - 65398 65420 GTTTTCCTGCAGCGCGGAATAAG 2 XylR
contig_74 + 68407 68429 TCAAATTCGAGATCGAAGGTAAG 1 XylR
SMAK75_001042 contig_74 + 86809 86831 - -32 -10 CTTTTCTTCGTTTGTGAAGGAAT 1 XylR
contig_382 - 5684 5706 ATGATCCTGAGCTTCGAGAATAC 1 XylR
SMAK75_004309 contig_382 - 6554 6576 + -42 -20 TTTTGCCCCCTTCTGAAGGAAAT 1 XylR
SMAK75_004309 contig_382 - 6588 6610 + -76 -54 ATTAATCCGCATCGGGGACAAAA 1 XylR
SMAK75_004310 contig_382 - 6588 6610 - -181 -159 ATTAATCCGCATCGGGGACAAAA 1 XylR
contig_14 - 1581 1603 CTTGTTCTCGGCCTCGAGGATAG 2 XylR
SMAK75_000150 contig_14 - 9068 9090 - -29 -7 GTTTTCCCGAAGCTGAAGCAAAC 1 XylR
contig_523 + 1514 1536 ATATCCTTCACCGCCGGATTTAT 2 XylR
SMAK75_005847 contig_524 + 12857 12879 - -55 -33 CTAATATTAAATTCCAAAGAACA 1 XylR
SMAK75_005848 contig_524 - 12857 12879 - -152 -130 TGTTCTTTGGAATTTAATATTAG 1 XylR
SMAK75_005888 contig_527 - 18862 18884 - -166 -144 ATTAATTTGATTATTGTAGGAAG 1 XylR
SMAK75_005887 contig_527 + 18862 18884 - -31 -9 CTTCCTACAATAATCAAATTAAT 1 XylR
SMAK75_005896 contig_527 + 25604 25626 + -134 -112 TTTTTCTTCCGGGCCGGAAGAAC 2 XylR
contig_93 - 750 772 GTTGTTTCCATTGGCAGGTTTAG 1 XylR
contig_93 + 17456 17478 CTTTCTCCAACCACCGAGAACAT 1 XylR
SMAK75_001292 contig_93 - 42014 42036 + -31 -9 TTTGCTTTACATACTAGGAAGAG 1 XylR
SMAK75_003779 contig_347 - 1724 1746 + -170 -148 ATTACTTCAAAACTTGAAGTAAT 3 XylR
SMAK75_003780 contig_347 + 1724 1746 + -61 -39 ATTACTTCAAGTTTTGAAGTAAT 3 XylR
SMAK75_003782 contig_347 - 3751 3773 - -226 -204 TATACTTCAAAAATTGAAGCAAT 1 XylR
SMAK75_002432 contig_205 - 5641 5663 + -71 -49 TTTTCCTCGACCGTGAATTAAAT 2 XylR
SMAK75_002458 contig_209 + 4126 4148 - -118 -96 TTTAGTTTCAAGTCTAAATTACG 1 XylR
contig_209 - 5191 5213 TTTACTCCGGAAACGGAGTTGAA 1 XylR
contig_209 - 9746 9768 GTGGCTGTAAGGTTTGAATAAAT 1 XylR
contig_209 - 17223 17245 ATTAACTCGGCAGGCGGCATAAA 2 XylR
SMAK75_007107 contig_653 - 2461 2483 + -42 -20 TTTGACGCCGTGCCTGGATAAAA 1 XylR
SMAK75_007108 contig_653 - 2461 2483 - -117 -95 TTTGACGCCGTGCCTGGATAAAA 1 XylR
SMAK75_007098 contig_651 - 6692 6714 - -218 -196 TTTTTCGGGCTTGCTAAATAAAC 1 XylR
SMAK75_007097 contig_651 - 6692 6714 + -230 -208 TTTTTCGGGCTTGCTAAATAAAC 1 XylR
SMAK75_007098 contig_651 - 6693 6715 - -217 -195 TTTTTTCGGGCTTGCTAAATAAA 1 XylR
SMAK75_007097 contig_651 + 6693 6715 - -231 -209 TTTATTTAGCAAGCCCGAAAAAA 1 XylR
SMAK75_005435 contig_493 + 3387 3409 - -137 -115 TATTTTCTGCGCTAGGAAAATAA 1 XylR
SMAK75_005436 contig_493 - 3387 3409 - -64 -42 TTATTTTCCTAGCGCAGAAAATA 1 XylR
contig_495 - 563 585 GTTACTTCGGCGGTGGAGGCTAT 2 XylR
contig_283 + 2975 2997 ATATTTTCGAGTCGCGCCAAAAC 1 XylR
contig_61 - 5899 5921 AGTGTTTCCGTAGGTGAGGAAAA 1 XylR
SMAK75_000742 contig_61 - 16791 16813 - -81 -59 TTAGCCTTGACTGCTAATAATAT 1 XylR
SMAK75_005924 contig_531 + 1404 1426 - -260 -238 GTTGTTTTGCGCCGGAAAGTCAA 1 XylR
SMAK75_005925 contig_531 + 1404 1426 + -361 -339 GTTGTTTTGCGCCGGAAAGTCAA 1 XylR
contig_531 - 10822 10844 CTGTTATCACAACGCAAAAAAAG 1 XylR
SMAK75_004836 contig_439 - 17621 17643 + -57 -35 ATTTTATTGAGTTGCGAAAGAGT 1 XylR
SMAK75_004836 contig_439 + 18036 18058 - -472 -450 GTGGGTTTCAGCTTCGAAATAAA 1 XylR
contig_439 - 28883 28905 ATGTATTCGAGATGCAACTAAAG 1 XylR
contig_437 - 5154 5176 ATTACTTTGACCGAGGAAAGAAA 1 XylR
SMAK75_004822 contig_437 - 6498 6520 - -73 -51 TTAAGTTCCAGATCGAGAAATAA 1 XylR
contig_539 - 12095 12117 GTGTTTTTCATAGCTGAAAAACA 1 XylR
SMAK75_006979 contig_641 - 167 189 + -106 -84 CTTTTTTGAATTCCTAGAATGAA 1 XylR
contig_644 - 17230 17252 ATTTTCACAGGAGGCGGAGAAAC 1 XylR
contig_644 - 22744 22766 TCATATTTACCGCCGAAGTTTAA 1 XylR
SMAK75_001229 contig_91 - 37295 37317 + -54 -32 ATTACTTCCCTCTCGGGATATTA 1 XylR
SMAK75_001229 contig_91 + 37374 37396 - -133 -111 TTAATTTCAATATTTGAGTATGT 1 XylR
contig_91 + 39531 39553 CTGATTCCAACCTGCAGAGTAAA 1 XylR
SMAK75_000458 contig_38 + 695 717 - -258 -236 TTTATTTTGAATTGGCAAGCAAA 2 XylR
SMAK75_000389 contig_35 - 7524 7546 - -560 -538 ATCACCTCAACCTTCGAATTAAG 1 XylR
contig_35 - 20382 20404 CTTAATTCCCGCCTCGACATAGT 1 XylR
contig_35 + 30484 30506 GTTATCGCGGTGGTTGGATTTAT 1 XylR
contig_35 + 40090 40112 CTTGTCCTGAGGCCCGAGAAGAT 1 XylR
SMAK75_000335 contig_31 - 13615 13637 + -266 -244 GTGTTTTTATCCGCCAAGAAAAT 1 XylR
SMAK75_000336 contig_31 - 13615 13637 - -225 -203 GTGTTTTTATCCGCCAAGAAAAT 1 XylR
SMAK75_004747 contig_429 - 6948 6970 + -37 -15 CTAATATCCGGCTTCAAAATTAA 1 XylR
contig_429 - 7401 7423 ATTACTTCGGTCTGCAGGGCTAT 2 XylR
SMAK75_004753 contig_429 - 11820 11842 + -89 -67 GTATTTTCCGTTCGTGCAATAAT 1 XylR
contig_423 - 10690 10712 TTTGATCTGATCTTTAAGAATTG 1 XylR
contig_542 + 3110 3132 ATAATTGCGCGGATCGAAATTAT 3 XylR
contig_309 + 8530 8552 ATTGATTTCGCCTGCAGATAGAT 1 XylR
contig_541 + 20586 20608 CTTGTTCGCATCGTCGAAGTTAA 1 XylR
contig_679 + 1386 1408 CTTTACTCAACCCCCAAAGACTT 1 XylR
contig_679 - 8357 8379 CTTGAATCAGGCCCCGAGTAAAA 2 XylR
contig_544 + 5772 5794 GCTATTCCGCGACCCAGATATAG 1 XylR
contig_670 - 19971 19993 TTCATTCCAATTGCCGAAGAAAC 1 XylR
contig_307 - 14430 14452 TTATTTTCGACCACGAGCATAAG 1 XylR
contig_394 - 2728 2750 ATTGTCTCTCCTGCGAAGATAAA 1 XylR
SMAK75_001182 contig_87 - 246 268 + -167 -145 ATTTTCTCTATCGTTGAATTGAC 1 XylR
SMAK75_001183 contig_87 + 246 268 + -25 -3 GTCAATTCAACGATAGAGAAAAT 1 XylR
contig_87 + 963 985 TCTAACTCAGAGGCTGAAATATA 1 XylR
contig_148 + 2575 2597 TTTTCCTTAAAGGCTGGCTTTAG 1 XylR
SMAK75_000233 contig_23 + 9761 9783 + -28 -6 CAATATTTAATTTACAAAATAAA 1 XylR
SMAK75_000232 contig_23 - 9761 9783 + -353 -331 TTTATTTTGTAAATTAAATATTG 1 XylR
SMAK75_000270 contig_26 - 347 369 - -105 -83 GTCGCTTTGGACTGCGAAGAAAG 1 XylR
contig_413 + 2394 2416 CTATATTCAATTGTCAAAAAACA 2 XylR
contig_413 - 4068 4090 CTTTCATCGGTGACCGAGAAAAA 2 XylR
contig_255 + 1698 1720 GTCGCTCCGAGAGTCAGATAAAG 1 XylR
contig_517 - 204 226 ATTTCTTCGATGAGGAAGGAGAT 1 XylR
contig_250 + 9434 9456 ATTACTTCAGCCCCTATGTTTAC 1 XylR
contig_250 + 17186 17208 GTACTCTCGATCGCCGAGGAAAT 1 XylR
SMAK75_002857 contig_251 + 1707 1729 - -171 -149 TTTGCTTTACACCGGAGGAGAAT 1 XylR
contig_643 + 5689 5711 CTTTTCCTGCCGCTTAGAAAGAT 1 XylR
contig_151 + 867 889 ATTGATCCAAAACTTGAAGAGAT 1 XylR
SMAK75_001882 contig_150 + 8155 8177 - -93 -71 TTTAATTTAGCCCGCAGGAAAAG 3 XylR
SMAK75_000666 contig_54 - 12213 12235 + -48 -26 TTATATCCAGATAGGAAGTTAGA 1 XylR
SMAK75_000667 contig_54 + 12213 12235 + -131 -109 TCTAACTTCCTATCTGGATATAA 1 XylR
contig_407 + 1353 1375 GTTACATTCCCGGTCGGGAAAAG 1 XylR
contig_245 + 6623 6645 TTTTCCTCGATTTCCTGGAAAAA 1 XylR
contig_409 + 18418 18440 CTTTGTCCGGCCGGGAAAAAAAG 1 XylR
SMAK75_004561 contig_409 + 19936 19958 - -34 -12 ATTTACTTGAGTTGCGAAGTTCT 1 XylR
contig_409 - 34370 34392 ATTTTGCCGAACTGCCAGAAAAA 1 XylR
SMAK75_005379 contig_487 + 7230 7252 + -165 -143 TTCATTTCAGCATCTGAGTTTAT 1 XylR
contig_487 + 12602 12624 CCATTCTCACCTGCTGAGTAAAT 1 XylR
SMAK75_005337 contig_482 + 6807 6829 - -190 -168 ATTGCCATAACTGTCAAATACAA 1 XylR
SMAK75_005338 contig_482 + 6807 6829 + -107 -85 ATTGCCATAACTGTCAAATACAA 1 XylR
SMAK75_005344 contig_482 - 13533 13555 + -293 -271 TTTTTCTCGACAGTCGAGAAAAT 4 XylR
SMAK75_005345 contig_482 - 13533 13555 - -115 -93 TTTTTCTCGACAGTCGAGAAAAT 4 XylR
SMAK75_005344 contig_482 + 13534 13556 - -294 -272 TTTTCTCGACTGTCGAGAAAAAA 2 XylR
SMAK75_005345 contig_482 + 13534 13555 + -114 -93 TTTTCTCGACTGTCGAGAAAAA 2 XylR
SMAK75_006750 contig_619 - 762 784 + -122 -100 CTTAAAGCGCGCTGCAAATTAAG 1 XylR
SMAK75_006751 contig_619 - 762 784 - -253 -231 CTTAAAGCGCGCTGCAAATTAAG 1 XylR
contig_329 - 306 328 ATATATCTGTTGGGGGAGAATAT 1 XylR
contig_364 + 11854 11876 CTTGTCCTCGGCCCTGGGGAAAA 1 XylR