https://github.com/combogenomics/rhizoreg
Raw File
Tip revision: 1a4e3c93b80528b764f829ac7e50f07592e2550c authored by Marco Galardini on 14 March 2015, 10:21:57 UTC
README updated
Tip revision: 1a4e3c9
literature_AK75_XylR.tab
	contig_40	+	9072	9094				ATTGCTCCACACCGTGAAATAGG	1	XylR
	contig_494	-	10461	10483				TTTTGTTTCGAAATCGATTAAAT	1	XylR
SMAK75_005457	contig_494	+	14672	14694	+	-226	-204	CTTTTTTTACCCCTGAATTTTAG	1	XylR
	contig_579	-	11517	11539				CTTATTCCAGTATCCGGAGACAG	1	XylR
	contig_579	+	11558	11580				TCTTTTTTAGGCCGGGAGAACAA	1	XylR
SMAK75_003050	contig_273	+	12761	12783	-	-527	-505	AATACTTTATAATCCGAAATAAC	1	XylR
SMAK75_003051	contig_273	-	12761	12783	-	-268	-246	GTTATTTCGGATTATAAAGTATT	1	XylR
	contig_631	-	7281	7303				AGAGTTCCGCGATTCGGAGAAAA	1	XylR
	contig_497	-	7714	7736				TTTTCTTCTGAAGCTGAATTTAT	1	XylR
SMAK75_006611	contig_605	-	3604	3626	+	-126	-104	GTTACTCTAAGGTTTAAGGATAG	1	XylR
SMAK75_006612	contig_605	-	3604	3626	-	-219	-197	GTTACTCTAAGGTTTAAGGATAG	1	XylR
	contig_473	-	3548	3570				TTAGCTTCTCTGAGTAAAGAAAG	1	XylR
	contig_674	-	6419	6441				CTTTCTTTCCGCCGGAAAAACAG	1	XylR
	contig_371	+	7806	7828				ATTTTCCCCATCCCCAAAAATCA	1	XylR
	contig_374	+	9871	9893				TTCTTCTCGAGCGTCGAGTTGAT	1	XylR
	contig_374	+	18663	18685				TTAGATTGGCGGTCGAAAGAAAG	1	XylR
	contig_374	-	20994	21016				TGAATTTCGATGCCGAAGTTTAA	1	XylR
SMAK75_004186	contig_377	-	5461	5483	-	-160	-138	TATATCTTAATGCTTGCGTAAAA	1	XylR
SMAK75_004185	contig_377	-	5461	5483	+	-403	-381	TATATCTTAATGCTTGCGTAAAA	1	XylR
	contig_377	-	6589	6611				ATTTTTCGGAACTGTGAGAAAAC	1	XylR
SMAK75_004187	contig_377	+	7065	7087	-	-177	-155	TTTGTTCCAAGAGCGGGAGCAAA	1	XylR
	contig_377	+	19401	19423				CTTATTCCGCGCTGCAGGAAAAC	1	XylR
	contig_377	+	22410	22432				TCAAATTCGAGATCGAAGGTAAG	1	XylR
SMAK75_004218	contig_377	+	40812	40834	-	-32	-10	CTTTTCTTCGTTTGTGAAGGAAT	1	XylR
	contig_8	+	2446	2468				ATATATTTCAGTATGCGAAATAT	1	XylR
	contig_260	-	9710	9732				CTCGTCCTGAATCGCGAAAATAT	1	XylR
SMAK75_005018	contig_461	+	127	149	-	-81	-59	TTTTATATCGAAAGCGATTAAAT	1	XylR
SMAK75_005019	contig_461	-	127	149	-	-122	-100	ATTTAATCGCTTTCGATATAAAA	1	XylR
SMAK75_005018	contig_461	-	213	235	+	-167	-145	GTTGTCGTGCCCACTAAAATAAA	1	XylR
SMAK75_005019	contig_461	+	213	235	+	-36	-14	TTTATTTTAGTGGGCACGACAAC	1	XylR
	contig_181	+	7163	7185				GTGGATTCGACCCTCGAAGAATT	1	XylR
	contig_465	+	2356	2378				AGTATTTTCACAGCCGGATAAAC	1	XylR
	contig_465	+	12058	12080				TTTGTCTCGGTTGGTGACGAAAT	1	XylR
SMAK75_005103	contig_465	+	42524	42546	-	-60	-38	TTTTACTCGCCTGAGGAGCTAAT	1	XylR
SMAK75_005105	contig_465	+	43243	43265	-	-99	-77	TTTCATCTGGTCACTAAAGATAA	1	XylR
SMAK75_005106	contig_465	+	43243	43265	+	-379	-357	TTTCATCTGGTCACTAAAGATAA	1	XylR
SMAK75_005105	contig_465	-	43528	43550	+	-384	-362	TTTGTCTCCTCTGCGGGATTTAA	1	XylR
	contig_465	+	57271	57293				GTATCTTCGGGAGTGAAGGTTAT	2	XylR
	contig_465	-	80636	80658				TTTGCCTCCATATCCAAAAGAAG	1	XylR
	contig_465	-	94047	94069				TTTACCTCTAAGATTGAGAAAAT	2	XylR
	contig_465	+	99681	99703				ATTTCGTTGATGGGCGAGTAAAA	3	XylR
	contig_465	+	106017	106039				GTAACTCTTCTGTCCGAGATAAT	1	XylR
SMAK75_005179	contig_465	-	109398	109420	-	-336	-314	TGAAGTTTGAATCGCGGAAAAAT	1	XylR
SMAK75_005178	contig_465	+	109398	109420	-	-69	-47	ATTTTTCCGCGATTCAAACTTCA	1	XylR
	contig_187	+	1529	1551				ATATTTCTCCGAGGCGAAATTCT	1	XylR
	contig_184	+	209	231				ATTGTCTCCGCCCTCAGATATGT	1	XylR
	contig_185	+	10486	10508				TGAGACTTGAAGCGCAAAGTTAA	1	XylR
	contig_185	-	11686	11708				ATTACCTTGGATCCCAAAGAAGT	1	XylR
SMAK75_002223	contig_185	+	15320	15342	+	-51	-29	TTTAATTAAGCTAACGGAATAAA	1	XylR
SMAK75_002223	contig_185	+	15321	15343	+	-50	-28	TTAATTAAGCTAACGGAATAAAG	1	XylR
SMAK75_002225	contig_185	-	20026	20048	+	-53	-31	TTATTTCAGGTTCCGGAATATAT	1	XylR
SMAK75_002226	contig_185	-	20026	20048	-	-346	-324	TTATTTCAGGTTCCGGAATATAT	1	XylR
SMAK75_002225	contig_185	-	20027	20049	+	-54	-32	ATTATTTCAGGTTCCGGAATATA	3	XylR
SMAK75_002226	contig_185	+	20027	20049	+	-345	-323	TATATTCCGGAACCTGAAATAAT	3	XylR
SMAK75_006396	contig_585	-	15559	15581	-	-154	-132	ATTAATTCGTTATTGAAATTAAA	2	XylR
SMAK75_006396	contig_585	+	15560	15582	+	-153	-131	TTAATTTCAATAACGAATTAATT	1	XylR
SMAK75_006338	contig_582	-	771	793	-	-222	-200	CTTTTTTTGCAACCATAAATTAG	1	XylR
	contig_582	-	6002	6024				ATCCATTTGCGGTTCGAAGAAAC	1	XylR
SMAK75_006343	contig_582	-	7437	7459	+	-182	-160	TTCATTCCGATAGCGGAGGAAAC	1	XylR
SMAK75_006354	contig_582	-	13734	13756	-	-279	-257	ATGATTTCAATTTTCGGGTTAAG	1	XylR
	contig_344	+	1680	1702				ATATTCATCACGAGGGAGAAAAT	1	XylR
	contig_589	-	9732	9754				TTTTCCTCGCCCTCCGGCAAAAT	2	XylR
SMAK75_006763	contig_621	+	3437	3459	+	-90	-68	ATTTTTTCAACCCATGAAAATTA	1	XylR
SMAK75_006763	contig_621	-	3438	3460	-	-89	-67	ATAATTTTCATGGGTTGAAAAAA	1	XylR
	contig_454	-	5883	5905				ATTATCTCCGGCAGGAGAAATAC	2	XylR
	contig_454	+	10446	10468				CTTTATTCGCTGACCAAATATGT	1	XylR
	contig_457	-	1029	1051				TTTAATTCAAAGCGTGAGATCAG	1	XylR
	contig_217	-	2119	2141				ATCAATTCGCCCTTCGGAATGAT	1	XylR
	contig_214	-	452	474				CTTAATCCACTGTTCACCATAAA	1	XylR
	contig_214	+	559	581				ATTAACCCTGATACCAATAAAAT	1	XylR
	contig_214	-	878	900				TTTACCTCCAAATGAAGAAATAA	1	XylR
	contig_214	+	879	901				TATTTCTTCATTTGGAGGTAAAA	1	XylR
	contig_198	-	13337	13359				ATAACCCTGCGGCTCAAAACTAC	2	XylR
	contig_596	+	2717	2739				AATCACTCCCGCGCCGAAATAAA	1	XylR
	contig_591	-	8377	8399				TTTATGTCGAAGTGGAAAAAGAA	1	XylR
	contig_590	+	2854	2876				TTATACCTACAACCCGAAGATCA	1	XylR
	contig_592	-	4183	4205				ATTATCTCGAGCGCAAAGAATAT	1	XylR
	contig_72	-	18985	19007				ATAGATGTACATGGCAAAGAAAT	1	XylR
	contig_112	+	1159	1181				CTTGACCCAATAGCCGAGATAGA	1	XylR
SMAK75_001440	contig_112	-	11653	11675	+	-33	-11	CTACTCTTCCCTGTCAGAATAAG	1	XylR
	contig_112	-	17661	17683				TTTTTCTTGAACAGTCCAAAAAT	1	XylR
SMAK75_006572	contig_599	+	4282	4304	+	-215	-193	CTTTTCTCCATTCTTGCGATTAT	1	XylR
	contig_297	-	5408	5430				TTCTCTTCGGCTACTGGGAATAT	1	XylR
SMAK75_003235	contig_294	-	5470	5492	+	-177	-155	ATAATTTCAAATATAAATTATAA	1	XylR
SMAK75_003236	contig_294	+	5470	5492	+	-259	-237	TTATAATTTATATTTGAAATTAT	1	XylR
	contig_74	+	6835	6857				TTTTTCTCGCAGCGTGGAATCAC	1	XylR
	contig_74	+	10786	10808				TTCACCTCGCGGCTCAAGAGAAT	1	XylR
SMAK75_000995	contig_74	+	39121	39143	-	-34	-12	TTTATATCAGAACTTGTATAAAC	1	XylR
SMAK75_000996	contig_74	+	39121	39143	+	-39	-17	TTTATATCAGAACTTGTATAAAC	1	XylR
	contig_74	+	44479	44501				TTTTCTCTAAGACTCAGGTCTAT	1	XylR
SMAK75_001009	contig_74	+	51458	51480	-	-403	-381	TTTTACGCAAGCATTAAGATATA	1	XylR
SMAK75_001010	contig_74	-	51458	51480	-	-160	-138	TATATCTTAATGCTTGCGTAAAA	1	XylR
	contig_74	-	52586	52608				ATTTTTCGGAACTGTGAGAAAAC	1	XylR
SMAK75_001011	contig_74	-	53062	53084	+	-177	-155	TTTGCTCCCGCTCTTGGAACAAA	1	XylR
	contig_74	-	65398	65420				GTTTTCCTGCAGCGCGGAATAAG	2	XylR
	contig_74	+	68407	68429				TCAAATTCGAGATCGAAGGTAAG	1	XylR
SMAK75_001042	contig_74	+	86809	86831	-	-32	-10	CTTTTCTTCGTTTGTGAAGGAAT	1	XylR
	contig_382	-	5684	5706				ATGATCCTGAGCTTCGAGAATAC	1	XylR
SMAK75_004309	contig_382	-	6554	6576	+	-42	-20	TTTTGCCCCCTTCTGAAGGAAAT	1	XylR
SMAK75_004309	contig_382	-	6588	6610	+	-76	-54	ATTAATCCGCATCGGGGACAAAA	1	XylR
SMAK75_004310	contig_382	-	6588	6610	-	-181	-159	ATTAATCCGCATCGGGGACAAAA	1	XylR
	contig_14	-	1581	1603				CTTGTTCTCGGCCTCGAGGATAG	2	XylR
SMAK75_000150	contig_14	-	9068	9090	-	-29	-7	GTTTTCCCGAAGCTGAAGCAAAC	1	XylR
	contig_523	+	1514	1536				ATATCCTTCACCGCCGGATTTAT	2	XylR
SMAK75_005847	contig_524	+	12857	12879	-	-55	-33	CTAATATTAAATTCCAAAGAACA	1	XylR
SMAK75_005848	contig_524	-	12857	12879	-	-152	-130	TGTTCTTTGGAATTTAATATTAG	1	XylR
SMAK75_005888	contig_527	-	18862	18884	-	-166	-144	ATTAATTTGATTATTGTAGGAAG	1	XylR
SMAK75_005887	contig_527	+	18862	18884	-	-31	-9	CTTCCTACAATAATCAAATTAAT	1	XylR
SMAK75_005896	contig_527	+	25604	25626	+	-134	-112	TTTTTCTTCCGGGCCGGAAGAAC	2	XylR
	contig_93	-	750	772				GTTGTTTCCATTGGCAGGTTTAG	1	XylR
	contig_93	+	17456	17478				CTTTCTCCAACCACCGAGAACAT	1	XylR
SMAK75_001292	contig_93	-	42014	42036	+	-31	-9	TTTGCTTTACATACTAGGAAGAG	1	XylR
SMAK75_003779	contig_347	-	1724	1746	+	-170	-148	ATTACTTCAAAACTTGAAGTAAT	3	XylR
SMAK75_003780	contig_347	+	1724	1746	+	-61	-39	ATTACTTCAAGTTTTGAAGTAAT	3	XylR
SMAK75_003782	contig_347	-	3751	3773	-	-226	-204	TATACTTCAAAAATTGAAGCAAT	1	XylR
SMAK75_002432	contig_205	-	5641	5663	+	-71	-49	TTTTCCTCGACCGTGAATTAAAT	2	XylR
SMAK75_002458	contig_209	+	4126	4148	-	-118	-96	TTTAGTTTCAAGTCTAAATTACG	1	XylR
	contig_209	-	5191	5213				TTTACTCCGGAAACGGAGTTGAA	1	XylR
	contig_209	-	9746	9768				GTGGCTGTAAGGTTTGAATAAAT	1	XylR
	contig_209	-	17223	17245				ATTAACTCGGCAGGCGGCATAAA	2	XylR
SMAK75_007107	contig_653	-	2461	2483	+	-42	-20	TTTGACGCCGTGCCTGGATAAAA	1	XylR
SMAK75_007108	contig_653	-	2461	2483	-	-117	-95	TTTGACGCCGTGCCTGGATAAAA	1	XylR
SMAK75_007098	contig_651	-	6692	6714	-	-218	-196	TTTTTCGGGCTTGCTAAATAAAC	1	XylR
SMAK75_007097	contig_651	-	6692	6714	+	-230	-208	TTTTTCGGGCTTGCTAAATAAAC	1	XylR
SMAK75_007098	contig_651	-	6693	6715	-	-217	-195	TTTTTTCGGGCTTGCTAAATAAA	1	XylR
SMAK75_007097	contig_651	+	6693	6715	-	-231	-209	TTTATTTAGCAAGCCCGAAAAAA	1	XylR
SMAK75_005435	contig_493	+	3387	3409	-	-137	-115	TATTTTCTGCGCTAGGAAAATAA	1	XylR
SMAK75_005436	contig_493	-	3387	3409	-	-64	-42	TTATTTTCCTAGCGCAGAAAATA	1	XylR
	contig_495	-	563	585				GTTACTTCGGCGGTGGAGGCTAT	2	XylR
	contig_283	+	2975	2997				ATATTTTCGAGTCGCGCCAAAAC	1	XylR
	contig_61	-	5899	5921				AGTGTTTCCGTAGGTGAGGAAAA	1	XylR
SMAK75_000742	contig_61	-	16791	16813	-	-81	-59	TTAGCCTTGACTGCTAATAATAT	1	XylR
SMAK75_005924	contig_531	+	1404	1426	-	-260	-238	GTTGTTTTGCGCCGGAAAGTCAA	1	XylR
SMAK75_005925	contig_531	+	1404	1426	+	-361	-339	GTTGTTTTGCGCCGGAAAGTCAA	1	XylR
	contig_531	-	10822	10844				CTGTTATCACAACGCAAAAAAAG	1	XylR
SMAK75_004836	contig_439	-	17621	17643	+	-57	-35	ATTTTATTGAGTTGCGAAAGAGT	1	XylR
SMAK75_004836	contig_439	+	18036	18058	-	-472	-450	GTGGGTTTCAGCTTCGAAATAAA	1	XylR
	contig_439	-	28883	28905				ATGTATTCGAGATGCAACTAAAG	1	XylR
	contig_437	-	5154	5176				ATTACTTTGACCGAGGAAAGAAA	1	XylR
SMAK75_004822	contig_437	-	6498	6520	-	-73	-51	TTAAGTTCCAGATCGAGAAATAA	1	XylR
	contig_539	-	12095	12117				GTGTTTTTCATAGCTGAAAAACA	1	XylR
SMAK75_006979	contig_641	-	167	189	+	-106	-84	CTTTTTTGAATTCCTAGAATGAA	1	XylR
	contig_644	-	17230	17252				ATTTTCACAGGAGGCGGAGAAAC	1	XylR
	contig_644	-	22744	22766				TCATATTTACCGCCGAAGTTTAA	1	XylR
SMAK75_001229	contig_91	-	37295	37317	+	-54	-32	ATTACTTCCCTCTCGGGATATTA	1	XylR
SMAK75_001229	contig_91	+	37374	37396	-	-133	-111	TTAATTTCAATATTTGAGTATGT	1	XylR
	contig_91	+	39531	39553				CTGATTCCAACCTGCAGAGTAAA	1	XylR
SMAK75_000458	contig_38	+	695	717	-	-258	-236	TTTATTTTGAATTGGCAAGCAAA	2	XylR
SMAK75_000389	contig_35	-	7524	7546	-	-560	-538	ATCACCTCAACCTTCGAATTAAG	1	XylR
	contig_35	-	20382	20404				CTTAATTCCCGCCTCGACATAGT	1	XylR
	contig_35	+	30484	30506				GTTATCGCGGTGGTTGGATTTAT	1	XylR
	contig_35	+	40090	40112				CTTGTCCTGAGGCCCGAGAAGAT	1	XylR
SMAK75_000335	contig_31	-	13615	13637	+	-266	-244	GTGTTTTTATCCGCCAAGAAAAT	1	XylR
SMAK75_000336	contig_31	-	13615	13637	-	-225	-203	GTGTTTTTATCCGCCAAGAAAAT	1	XylR
SMAK75_004747	contig_429	-	6948	6970	+	-37	-15	CTAATATCCGGCTTCAAAATTAA	1	XylR
	contig_429	-	7401	7423				ATTACTTCGGTCTGCAGGGCTAT	2	XylR
SMAK75_004753	contig_429	-	11820	11842	+	-89	-67	GTATTTTCCGTTCGTGCAATAAT	1	XylR
	contig_423	-	10690	10712				TTTGATCTGATCTTTAAGAATTG	1	XylR
	contig_542	+	3110	3132				ATAATTGCGCGGATCGAAATTAT	3	XylR
	contig_309	+	8530	8552				ATTGATTTCGCCTGCAGATAGAT	1	XylR
	contig_541	+	20586	20608				CTTGTTCGCATCGTCGAAGTTAA	1	XylR
	contig_679	+	1386	1408				CTTTACTCAACCCCCAAAGACTT	1	XylR
	contig_679	-	8357	8379				CTTGAATCAGGCCCCGAGTAAAA	2	XylR
	contig_544	+	5772	5794				GCTATTCCGCGACCCAGATATAG	1	XylR
	contig_670	-	19971	19993				TTCATTCCAATTGCCGAAGAAAC	1	XylR
	contig_307	-	14430	14452				TTATTTTCGACCACGAGCATAAG	1	XylR
	contig_394	-	2728	2750				ATTGTCTCTCCTGCGAAGATAAA	1	XylR
SMAK75_001182	contig_87	-	246	268	+	-167	-145	ATTTTCTCTATCGTTGAATTGAC	1	XylR
SMAK75_001183	contig_87	+	246	268	+	-25	-3	GTCAATTCAACGATAGAGAAAAT	1	XylR
	contig_87	+	963	985				TCTAACTCAGAGGCTGAAATATA	1	XylR
	contig_148	+	2575	2597				TTTTCCTTAAAGGCTGGCTTTAG	1	XylR
SMAK75_000233	contig_23	+	9761	9783	+	-28	-6	CAATATTTAATTTACAAAATAAA	1	XylR
SMAK75_000232	contig_23	-	9761	9783	+	-353	-331	TTTATTTTGTAAATTAAATATTG	1	XylR
SMAK75_000270	contig_26	-	347	369	-	-105	-83	GTCGCTTTGGACTGCGAAGAAAG	1	XylR
	contig_413	+	2394	2416				CTATATTCAATTGTCAAAAAACA	2	XylR
	contig_413	-	4068	4090				CTTTCATCGGTGACCGAGAAAAA	2	XylR
	contig_255	+	1698	1720				GTCGCTCCGAGAGTCAGATAAAG	1	XylR
	contig_517	-	204	226				ATTTCTTCGATGAGGAAGGAGAT	1	XylR
	contig_250	+	9434	9456				ATTACTTCAGCCCCTATGTTTAC	1	XylR
	contig_250	+	17186	17208				GTACTCTCGATCGCCGAGGAAAT	1	XylR
SMAK75_002857	contig_251	+	1707	1729	-	-171	-149	TTTGCTTTACACCGGAGGAGAAT	1	XylR
	contig_643	+	5689	5711				CTTTTCCTGCCGCTTAGAAAGAT	1	XylR
	contig_151	+	867	889				ATTGATCCAAAACTTGAAGAGAT	1	XylR
SMAK75_001882	contig_150	+	8155	8177	-	-93	-71	TTTAATTTAGCCCGCAGGAAAAG	3	XylR
SMAK75_000666	contig_54	-	12213	12235	+	-48	-26	TTATATCCAGATAGGAAGTTAGA	1	XylR
SMAK75_000667	contig_54	+	12213	12235	+	-131	-109	TCTAACTTCCTATCTGGATATAA	1	XylR
	contig_407	+	1353	1375				GTTACATTCCCGGTCGGGAAAAG	1	XylR
	contig_245	+	6623	6645				TTTTCCTCGATTTCCTGGAAAAA	1	XylR
	contig_409	+	18418	18440				CTTTGTCCGGCCGGGAAAAAAAG	1	XylR
SMAK75_004561	contig_409	+	19936	19958	-	-34	-12	ATTTACTTGAGTTGCGAAGTTCT	1	XylR
	contig_409	-	34370	34392				ATTTTGCCGAACTGCCAGAAAAA	1	XylR
SMAK75_005379	contig_487	+	7230	7252	+	-165	-143	TTCATTTCAGCATCTGAGTTTAT	1	XylR
	contig_487	+	12602	12624				CCATTCTCACCTGCTGAGTAAAT	1	XylR
SMAK75_005337	contig_482	+	6807	6829	-	-190	-168	ATTGCCATAACTGTCAAATACAA	1	XylR
SMAK75_005338	contig_482	+	6807	6829	+	-107	-85	ATTGCCATAACTGTCAAATACAA	1	XylR
SMAK75_005344	contig_482	-	13533	13555	+	-293	-271	TTTTTCTCGACAGTCGAGAAAAT	4	XylR
SMAK75_005345	contig_482	-	13533	13555	-	-115	-93	TTTTTCTCGACAGTCGAGAAAAT	4	XylR
SMAK75_005344	contig_482	+	13534	13556	-	-294	-272	TTTTCTCGACTGTCGAGAAAAAA	2	XylR
SMAK75_005345	contig_482	+	13534	13555	+	-114	-93	TTTTCTCGACTGTCGAGAAAAA	2	XylR
SMAK75_006750	contig_619	-	762	784	+	-122	-100	CTTAAAGCGCGCTGCAAATTAAG	1	XylR
SMAK75_006751	contig_619	-	762	784	-	-253	-231	CTTAAAGCGCGCTGCAAATTAAG	1	XylR
	contig_329	-	306	328				ATATATCTGTTGGGGGAGAATAT	1	XylR
	contig_364	+	11854	11876				CTTGTCCTCGGCCCTGGGGAAAA	1	XylR
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