https://github.com/combogenomics/rhizoreg
Raw File
Tip revision: 1a4e3c93b80528b764f829ac7e50f07592e2550c authored by Marco Galardini on 14 March 2015, 10:21:57 UTC
README updated
Tip revision: 1a4e3c9
literature_C0438LL_NesR.tab
SMC438_000653	contig_44	+	203	222	+	-49	-30	ATATCGCGAACGATTTATTT	1	NesR
SMC438_000652	contig_44	+	203	222	-	-151	-132	ATATCGCGAACGATTTATTT	1	NesR
	contig_42	-	5979	5998				ACGTAACGAGCTTCGTATGT	1	NesR
	contig_42	-	31715	31734				ACTTCAAGAGATAGTCATAG	1	NesR
SMC438_003885	contig_274	-	1139	1158	+	-53	-34	ATATTTAGGCAAATCCATAT	1	NesR
	contig_221	-	2607	2626				ACATCAACAGAGATTTATGT	2	NesR
	contig_470	-	11554	11573				TCATCAACACCTATTTCTCC	1	NesR
	contig_477	-	6990	7009				ATAAAAATACCGCGTCAGGT	1	NesR
SMC438_002532	contig_178	-	5205	5224	+	-515	-496	ACATACAAACTTCATGAAGT	1	NesR
SMC438_002533	contig_178	-	5205	5224	-	-78	-59	ACATACAAACTTCATGAAGT	1	NesR
	contig_178	+	18609	18628				ACATGATGACGGCTTTCTGG	1	NesR
	contig_178	+	24311	24330				CCTGAAAGACATATCTATCT	1	NesR
	contig_177	-	1574	1593				GTATAAAGGCCTATTCAATA	1	NesR
	contig_175	+	14678	14697				TCAAAGAGACCGCTTGATGT	1	NesR
SMC438_002500	contig_175	-	52295	52314	-	-55	-36	ATAAAGATATCTTTATGTGT	1	NesR
SMC438_002500	contig_175	-	52297	52316	-	-53	-34	ATATAAAGATATCTTTATGT	4	NesR
SMC438_002500	contig_175	-	52299	52318	-	-51	-32	AGATATAAAGATATCTTTAT	1	NesR
SMC438_002503	contig_175	-	55519	55538	+	-26	-7	ATATACAAATCCCGTCAGAT	1	NesR
	contig_173	+	5312	5331				CGATGGAGACATATGTATCT	1	NesR
SMC438_005631	contig_379	-	7691	7710	-	-147	-128	TCACGCAGACCTATTTACAA	1	NesR
	contig_379	+	10972	10991				ATGTCTAGCCATCTTTTAAT	1	NesR
SMC438_005610	contig_378	+	1317	1336	-	-47	-28	ACATGAACACAGCGCAATAT	1	NesR
	contig_371	-	8123	8142				ACCTCAACATCTATTTCGAC	1	NesR
	contig_371	-	14547	14566				ATATAAAGACCTCTTTATAT	4	NesR
	contig_371	+	14549	14568				ATAAAGAGGTCTTTATATGT	1	NesR
SMC438_005550	contig_371	+	15435	15454	-	-186	-167	AGATCACGATGTTTTTAGGT	2	NesR
SMC438_005558	contig_371	+	26679	26698	+	-51	-32	ACAACAAAATATCTATAGTT	1	NesR
SMC438_005557	contig_371	+	26679	26698	-	-97	-78	ACAACAAAATATCTATAGTT	1	NesR
	contig_370	+	2553	2572				GGCTGAAAACCTCTTTTTAT	1	NesR
SMC438_005496	contig_370	-	59724	59743	-	-92	-73	ACATAAAGACATACACAGGA	2	NesR
SMC438_003791	contig_268	+	16472	16491	-	-129	-110	GTCTGAAGACCTGTTGATTT	1	NesR
SMC438_003813	contig_268	+	34883	34902	+	-28	-9	ATTTAAATAGCTATGTCTAG	1	NesR
SMC438_003815	contig_268	-	37166	37185	+	-296	-277	CCATAAAGAAATCTAGATGC	2	NesR
SMC438_003816	contig_268	+	37166	37185	+	-456	-437	GCATCTAGATTTCTTTATGG	2	NesR
	contig_8	-	7466	7485				CTATAATGACAGACTTATCG	1	NesR
	contig_265	-	2891	2910				ACCTAAAAACATCGTGATCT	2	NesR
SMC438_000046	contig_4	+	10131	10150	-	-143	-124	AGATCAATATCTTTCTATTT	1	NesR
SMC438_000047	contig_4	-	10131	10150	-	-371	-352	AAATAGAAAGATATTGATCT	1	NesR
	contig_4	+	17750	17769				CGATAAACGTATCGTTATAG	1	NesR
SMC438_000066	contig_4	-	33341	33360	+	-152	-133	GCTTAGCGCCCTCTTTATTT	1	NesR
SMC438_000083	contig_4	+	53080	53099	-	-557	-538	GCATGAAGACGTAATTACTT	1	NesR
SMC438_000084	contig_4	+	53080	53099	+	-302	-283	GCATGAAGACGTAATTACTT	1	NesR
	contig_465	-	90	109				ATATAACGGGACCCTTATGC	2	NesR
	contig_464	+	6717	6736				GCAGAAATTTCTATTTATCC	1	NesR
SMC438_006774	contig_464	-	14625	14644	+	-51	-32	AGGTAAAGAATCAATTATGT	1	NesR
	contig_184	+	420	439				ATTTAACAGTACCTTTAGGC	1	NesR
	contig_184	+	54590	54609				GTATCAAGACCTCTTTGCAC	2	NesR
	contig_185	-	2877	2896				ATGTTGAAATCTATATATAG	1	NesR
	contig_185	-	2879	2898				AGATGTTGAAATCTATATAT	1	NesR
	contig_296	+	4778	4797				ACATACAGATCTCTTCAAAC	2	NesR
	contig_296	+	7566	7585				CGCGAGCGATCTCTTTATGT	1	NesR
SMC438_005075	contig_344	-	4495	4514	+	-262	-243	ACTTAACAACCTATCAATAT	1	NesR
SMC438_005076	contig_344	-	4495	4514	-	-84	-65	ACTTAACAACCTATCAATAT	1	NesR
SMC438_005094	contig_344	-	21587	21606	+	-573	-554	ATAAACATATCTTTATGTGT	1	NesR
SMC438_005094	contig_344	+	21589	21608	-	-575	-556	ACATAAAGATATGTTTATGT	3	NesR
SMC438_005008	contig_341	+	1793	1812	-	-62	-43	ATGCAAAGGCAGCCGTATAT	1	NesR
SMC438_004000	contig_284	+	937	956	-	-353	-334	ATAGAAAATAATATTTACCT	1	NesR
	contig_191	+	11066	11085				ACAGCAAAACCCCTTCATGC	1	NesR
	contig_192	-	110	129				ATGCACATATCTCTTGTTGT	1	NesR
	contig_195	+	1088	1107				ACGAAACGGTATATGCATAT	1	NesR
SMC438_003153	contig_215	-	10964	10983	-	-86	-67	ATGTATAGACATGTTGTTGA	1	NesR
SMC438_003152	contig_215	-	10964	10983	+	-64	-45	ATGTATAGACATGTTGTTGA	1	NesR
	contig_78	+	4960	4979				ACATGACGGCATAATGTTAT	1	NesR
SMC438_001682	contig_110	+	34933	34952	+	-380	-361	ATTTCATAATAGATATATAT	1	NesR
SMC438_001681	contig_110	+	34933	34952	-	-107	-88	ATTTCATAATAGATATATAT	1	NesR
SMC438_004114	contig_290	+	6735	6754	+	-287	-268	ACCTGAAAACATCGTGATCT	1	NesR
	contig_290	+	7705	7724				TTCTGAAGCTGAATTTATAT	1	NesR
	contig_291	-	5453	5472				ACCTAAAAACATCGTGATTC	1	NesR
	contig_77	+	3735	3754				ACAGCAAGATCTCATGAAAT	2	NesR
	contig_116	-	7064	7083				ACATCCACACCTATGTCGAT	1	NesR
	contig_14	+	15940	15959				ATCGAAAGCCACACTGATGT	1	NesR
SMC438_000211	contig_16	-	18962	18981	-	-141	-122	ATATAGTGAACCCTATATGC	1	NesR
SMC438_000210	contig_16	-	18962	18981	+	-468	-449	ATATAGTGAACCCTATATGC	1	NesR
SMC438_000211	contig_16	+	18964	18983	+	-139	-120	ATATAGGGTTCACTATATTT	1	NesR
	contig_448	+	8438	8457				ACCCAAAAACATCGTGATCT	1	NesR
SMC438_006177	contig_422	-	14955	14974	+	-170	-151	ACACGACGACATACCCATGT	1	NesR
	contig_446	+	14708	14727				GCCTCAAAACATCTTTCGAT	1	NesR
	contig_201	-	4825	4844				ACTTCAACATCTCGTTCGAT	1	NesR
	contig_203	+	16	35				ACCTAAAAACATCGTGATCC	1	NesR
SMC438_002984	contig_203	-	1027	1046	-	-138	-119	ATTTAAAGAAAAATATGCAT	1	NesR
SMC438_006888	contig_475	+	4799	4818	-	-71	-52	ACACCAATACATATTCTCGT	1	NesR
	contig_288	-	1588	1607				ATATGAATATCTCCCAATAC	1	NesR
SMC438_004466	contig_325	-	22354	22373	+	-58	-39	ATATCGAAAAATATTACTGT	1	NesR
	contig_129	+	17200	17219				ATCGAAGCACATATTCATGC	1	NesR
	contig_129	-	61254	61273				ACATAAATGTCTCCTTCTCT	2	NesR
SMC438_001968	contig_129	+	67587	67606	-	-254	-235	ACGTCAACGACTATTTGTAT	1	NesR
SMC438_001839	contig_124	-	3930	3949	+	-57	-38	ACGTCAAGATACATTGGAGT	1	NesR
SMC438_001840	contig_124	-	3930	3949	-	-76	-57	ACGTCAAGATACATTGGAGT	1	NesR
	contig_127	+	7153	7172				GCAAGACGACCTGTTTCTAT	1	NesR
	contig_478	-	4657	4676				TCATCGAAACGTATTTCTGT	1	NesR
	contig_435	-	99	118				ATTTCCAGATCTAACTATCT	1	NesR
SMC438_006403	contig_435	+	5907	5926	+	-105	-86	ATACGCATACCTCCTAATAT	1	NesR
	contig_433	-	839	858				ACAGAAAGGTCTACCTATGA	2	NesR
SMC438_001366	contig_93	-	14653	14672	+	-32	-13	AAATCAAGACATAGTCCTGG	1	NesR
SMC438_001367	contig_93	-	14653	14672	-	-73	-54	AAATCAAGACATAGTCCTGG	1	NesR
SMC438_002031	contig_132	-	16478	16497	-	-61	-42	ACAAAAAGACATTTGCAAGC	1	NesR
SMC438_002030	contig_132	-	16478	16497	+	-86	-67	ACAAAAAGACATTTGCAAGC	1	NesR
SMC438_004668	contig_337	-	33717	33736	+	-259	-240	AAGTAAAGTTTAGTTTATTT	1	NesR
SMC438_004669	contig_337	+	33717	33736	+	-90	-71	AAATAAACTAAACTTTACTT	1	NesR
	contig_337	-	92076	92095				TCATCACGATATCTCGATGA	1	NesR
	contig_337	+	107615	107634				GCATAATGATGAAGTTATAT	2	NesR
SMC438_004739	contig_337	-	112454	112473	+	-238	-219	ATATCGAGACAAATCTTTGC	1	NesR
SMC438_004740	contig_337	-	113714	113733	+	-115	-96	ATCAATAGAGCGATTTTTGT	1	NesR
	contig_331	+	12211	12230				ATTTGAAGTTCTCCTTATTC	1	NesR
SMC438_004574	contig_331	+	14363	14382	-	-398	-379	TCATAGTGATGTCTCTTTGT	1	NesR
SMC438_004581	contig_331	+	20202	20221	-	-68	-49	AGATCAAAATCTAATTAGGA	1	NesR
	contig_94	-	15081	15100				GGATGCGGACATCTTTCTGT	1	NesR
	contig_94	-	17481	17500				TCCTGACGATATCTATATTT	1	NesR
	contig_134	-	20378	20397				TCACAGAGACCTTTTTCGAT	1	NesR
SMC438_001459	contig_98	+	1832	1851	+	-101	-82	ATAAAACGATCTATCGGTTT	1	NesR
SMC438_004792	contig_339	-	887	906	-	-62	-43	ATGCAAAGGCAGCCGTATAT	1	NesR
	contig_339	-	56115	56134				GCTTAAAGACCGCCTTGCAT	1	NesR
	contig_339	+	56571	56590				CCATGAAGATTTCCTTCCGT	1	NesR
	contig_339	+	79525	79544				ATATATCGATTTCATCACAT	1	NesR
	contig_339	+	133401	133420				ATTTGAAGCCGTATTTATGC	2	NesR
	contig_339	-	167178	167197				ACAGGAAGACCTCCCGATGG	1	NesR
	contig_339	-	179444	179463				ATTTAAAGGCCTCTCAATTT	1	NesR
SMC438_000478	contig_31	+	2634	2653	+	-83	-64	TCATCGAGACGTCATCATGT	1	NesR
SMC438_005770	contig_387	-	3617	3636	-	-53	-34	ATGTGAAAATGTACATATGT	1	NesR
SMC438_005769	contig_387	-	3617	3636	+	-108	-89	ATGTGAAAATGTACATATGT	1	NesR
SMC438_003251	contig_223	+	8222	8241	-	-35	-16	ATTCATAGATCGCCTTATAA	1	NesR
SMC438_003253	contig_223	+	11427	11446	-	-74	-55	CTATACAGATAAATTTCTGT	2	NesR
SMC438_003254	contig_223	-	11427	11446	-	-404	-385	ACAGAAATTTATCTGTATAG	2	NesR
	contig_427	-	38	57				ATAGAAAGCTCTCCGTCTGT	2	NesR
	contig_426	+	38	57				ACAGACGGAGAGCTTTCTAT	2	NesR
	contig_426	+	30975	30994				CTTCAACAATCTCTTCATGT	1	NesR
	contig_227	-	862	881				TGATAAATACCTGTTCATCT	1	NesR
	contig_307	-	140	159				TCGGAAAGACAGATATAGAT	1	NesR
	contig_80	+	11015	11034				ATATACAGACGCCAATGTAT	1	NesR
	contig_84	-	20899	20918				ATATCCAGACGAACTTATTT	1	NesR
	contig_84	+	49665	49684				TCATAGAAACCTCCTTGGAT	1	NesR
	contig_84	-	82414	82433				ACATCAAGAGCCCTTCAGGC	1	NesR
SMC438_001251	contig_84	-	85468	85487	-	-22	-3	ACTGAGAGTCCTATGTATTT	1	NesR
	contig_88	-	135	154				ATCCGAAGCCCTCTCTATAA	1	NesR
SMC438_000286	contig_20	+	14477	14496	+	-31	-12	ATTTTAGGACCTCCCGATGT	1	NesR
	contig_22	-	1482	1501				ACCTATAAACATCGTGATCT	1	NesR
SMC438_006122	contig_416	+	5032	5051	+	-139	-120	ACATACACATCGCTTTTCAG	1	NesR
	contig_26	-	10146	10165				GCAGAAAGGTCAGATTATGT	1	NesR
SMC438_000427	contig_28	+	20300	20319	-	-68	-49	ACATTAAGACCGCACTCGAT	1	NesR
	contig_28	-	23415	23434				AGATTAATCCATCTGGATGT	1	NesR
	contig_28	+	30553	30572				TCATGAGCACATCTGAATGT	1	NesR
	contig_28	-	30586	30605				ACACAAACATCTGTTGACAT	2	NesR
	contig_483	-	6924	6943				CCATGACGACATATTCGCGT	1	NesR
	contig_483	-	9236	9255				TGCTAACGGTATCTTTGTGT	1	NesR
	contig_395	-	5512	5531				ACATCCCGGTCTTTTGATGT	1	NesR
SMC438_006088	contig_414	-	21423	21442	+	-77	-58	TAAAATTGATCGATTTATGT	1	NesR
SMC438_006089	contig_414	-	21423	21442	-	-66	-47	TAAAATTGATCGATTTATGT	1	NesR
	contig_414	+	25094	25113				ACCGGAAGAACTATTTCTAT	1	NesR
	contig_258	+	9545	9564				ATTTAACCGTATACTTATCA	1	NesR
SMC438_003606	contig_257	+	19311	19330	+	-124	-105	GCGCAAAAACCTCTTTCCGT	1	NesR
	contig_257	-	21577	21596				GCGAAAGGATATCCTTATGG	1	NesR
SMC438_003612	contig_257	-	24646	24665	-	-254	-235	ATATAATTTCAAATATAAAT	1	NesR
SMC438_003612	contig_257	+	24670	24689	+	-230	-211	ATATTTAGTAATGTTTATAG	1	NesR
SMC438_003611	contig_257	+	24670	24689	-	-203	-184	ATATTTAGTAATGTTTATAG	1	NesR
SMC438_003612	contig_257	-	24737	24756	-	-163	-144	ATAGAAGGTTATGTCCATAT	1	NesR
SMC438_003611	contig_257	-	24737	24756	+	-270	-251	ATAGAAGGTTATGTCCATAT	1	NesR
	contig_255	-	3205	3224				TCATAACGACCTATTTCTCC	1	NesR
	contig_252	+	9036	9055				ATATCAAAACAAATTTTCAA	1	NesR
	contig_399	+	16060	16079				AGACCAAGACAATTTTAGGT	1	NesR
SMC438_005881	contig_398	-	23940	23959	+	-192	-173	ACAAAAAGACTTTCTGATAT	2	NesR
SMC438_005882	contig_398	+	23940	23959	+	-166	-147	ATATCAGAAAGTCTTTTTGT	2	NesR
SMC438_004385	contig_317	+	866	885	+	-244	-225	AGATCACGATGTTTTTAGGT	2	NesR
SMC438_004384	contig_317	+	866	885	-	-553	-534	AGATCACGATGTTTTTAGGT	2	NesR
SMC438_004353	contig_315	+	426	445	-	-66	-47	ACATAAAGATATCTTTATGT	4	NesR
SMC438_004366	contig_315	+	14098	14117	+	-175	-156	CAGGAAAGATCGCATTATGT	1	NesR
SMC438_004338	contig_314	+	4939	4958	-	-42	-23	ACTGAAAGATAGCTTAACTT	1	NesR
SMC438_004339	contig_314	+	4939	4958	+	-102	-83	ACTGAAAGATAGCTTAACTT	1	NesR
	contig_155	+	1197	1216				ATATTTGGATCTCTCTTTGC	1	NesR
	contig_153	+	2425	2444				TCATTGAGATATCTCGAGAT	1	NesR
SMC438_003494	contig_251	-	26182	26201	-	-93	-74	ACGGGAAGATCTCTGGAAGT	1	NesR
	contig_56	-	2551	2570				ATATACGGGCCCATATTTAT	1	NesR
	contig_56	+	4047	4066				AGCCAAAGATATTTATAAGT	1	NesR
	contig_56	+	4858	4877				ACAGAAATATCTCTTGCTGT	2	NesR
	contig_56	+	5155	5174				AAATAAAGATCTCTCGACAC	2	NesR
SMC438_000774	contig_50	+	1685	1704	-	-55	-36	ACAGCCGAATCTCTTTTTGT	1	NesR
SMC438_000774	contig_50	-	1710	1729	+	-80	-61	ACCTAAAGACATCGTGATCT	2	NesR
SMC438_005972	contig_407	+	941	960	-	-353	-334	ATAGAAAATAATATTTACCT	1	NesR
SMC438_005973	contig_407	-	2170	2189	-	-145	-126	ACATGGTGACCTGTTTCTGT	1	NesR
	contig_407	+	3878	3897				GCAAAAAGACATGACTACAT	1	NesR
SMC438_000922	contig_64	+	3166	3185	+	-277	-258	GTAAAAAGCCATGTTGTTGT	1	NesR
SMC438_005951	contig_404	-	6030	6049	-	-73	-54	ACAGAAAAACGGATTTCTAT	2	NesR
SMC438_005950	contig_404	-	6030	6049	+	-226	-207	ACAGAAAAACGGATTTCTAT	2	NesR
SMC438_005958	contig_404	-	14572	14591	+	-338	-319	ATATGTTCATATATCAATAT	1	NesR
SMC438_005959	contig_404	-	14580	14599	-	-583	-564	ATTTTATGATATGTTCATAT	2	NesR
SMC438_005958	contig_404	+	14580	14599	-	-346	-327	ATATGAACATATCATAAAAT	2	NesR
	contig_249	+	10899	10918				ACATCAAGACCTCGCTGTTC	1	NesR
SMC438_003451	contig_249	+	18070	18089	+	-94	-75	ATATAAAGATATATTTATGT	4	NesR
	contig_400	-	15676	15695				ACACAAAAACATCATTCGGC	1	NesR
	contig_450	-	2542	2561				ACGTTAAGCCCATTTCATAT	1	NesR
	contig_241	-	737	756				GCATCAACACCGATGTATCT	1	NesR
SMC438_000966	contig_66	-	8106	8125	-	-208	-189	ATATAAACGTAAGTATCTAT	1	NesR
	contig_63	-	4695	4714				CTTTACAGTCAACTTGATGT	1	NesR
SMC438_003371	contig_242	-	2587	2606	-	-152	-133	ATGTATATGCACATGTATAT	1	NesR
SMC438_003370	contig_242	-	2587	2606	+	-35	-16	ATGTATATGCACATGTATAT	1	NesR
	contig_266	-	740	759				ATACAATGATCGATTTTTGA	2	NesR
SMC438_002302	contig_160	-	13773	13792	-	-69	-50	GTATAAAATCTACTTTATAC	1	NesR
SMC438_002301	contig_160	-	13773	13792	+	-38	-19	GTATAAAATCTACTTTATAC	1	NesR
SMC438_002340	contig_163	-	7710	7729	+	-126	-107	ATATATAGCTTTATTTGAAA	1	NesR
SMC438_002340	contig_163	+	7714	7733	-	-130	-111	AAATAAAGCTATATATACTA	1	NesR
	contig_164	+	108	127				CTATAGAGATAAGGTTCTAA	1	NesR
SMC438_002349	contig_164	+	860	879	+	-146	-127	AGCTAGATATATCTTGACAT	2	NesR
	contig_164	+	1570	1589				ATCTGGACCTATATCTATGT	1	NesR
SMC438_007039	contig_480	-	22413	22432	-	-72	-53	AGATATAGCTTTCTTTATAC	2	NesR
	contig_368	+	197	216				CCAAGAAGATCGCATAATGT	1	NesR
	contig_369	-	14999	15018				TTACGGAGATATATTCATGG	1	NesR
SMC438_005426	contig_369	-	32291	32310	+	-253	-234	CTAAAACGATCGCATAATGT	1	NesR
SMC438_005432	contig_369	+	35511	35530	-	-113	-94	ACTTAAATATATCGCGATAA	2	NesR
SMC438_005433	contig_369	-	35511	35530	-	-51	-32	TTATCGCGATATATTTAAGT	2	NesR
	contig_369	-	37098	37117				ATAGAGAGGTATCCCTATGG	1	NesR
	contig_328	-	8553	8572				TCATAGAGACCTCCGGCTGT	1	NesR
	contig_363	+	887	906				ATATCATGGTCTATCTGCAT	1	NesR
	contig_360	-	3983	4002				AAGGAAAAACCTATTTCCGT	1	NesR
SMC438_005360	contig_365	+	6580	6599	-	-56	-37	GCAAAACGTCCTCTTCATTT	1	NesR
SMC438_005361	contig_365	+	6580	6599	+	-198	-179	GCAAAACGTCCTCTTCATTT	1	NesR
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