https://github.com/combogenomics/rhizoreg
Tip revision: 1a4e3c93b80528b764f829ac7e50f07592e2550c authored by Marco Galardini on 14 March 2015, 10:21:57 UTC
README updated
README updated
Tip revision: 1a4e3c9
literature_C0438LL_NesR.tab
SMC438_000653 contig_44 + 203 222 + -49 -30 ATATCGCGAACGATTTATTT 1 NesR
SMC438_000652 contig_44 + 203 222 - -151 -132 ATATCGCGAACGATTTATTT 1 NesR
contig_42 - 5979 5998 ACGTAACGAGCTTCGTATGT 1 NesR
contig_42 - 31715 31734 ACTTCAAGAGATAGTCATAG 1 NesR
SMC438_003885 contig_274 - 1139 1158 + -53 -34 ATATTTAGGCAAATCCATAT 1 NesR
contig_221 - 2607 2626 ACATCAACAGAGATTTATGT 2 NesR
contig_470 - 11554 11573 TCATCAACACCTATTTCTCC 1 NesR
contig_477 - 6990 7009 ATAAAAATACCGCGTCAGGT 1 NesR
SMC438_002532 contig_178 - 5205 5224 + -515 -496 ACATACAAACTTCATGAAGT 1 NesR
SMC438_002533 contig_178 - 5205 5224 - -78 -59 ACATACAAACTTCATGAAGT 1 NesR
contig_178 + 18609 18628 ACATGATGACGGCTTTCTGG 1 NesR
contig_178 + 24311 24330 CCTGAAAGACATATCTATCT 1 NesR
contig_177 - 1574 1593 GTATAAAGGCCTATTCAATA 1 NesR
contig_175 + 14678 14697 TCAAAGAGACCGCTTGATGT 1 NesR
SMC438_002500 contig_175 - 52295 52314 - -55 -36 ATAAAGATATCTTTATGTGT 1 NesR
SMC438_002500 contig_175 - 52297 52316 - -53 -34 ATATAAAGATATCTTTATGT 4 NesR
SMC438_002500 contig_175 - 52299 52318 - -51 -32 AGATATAAAGATATCTTTAT 1 NesR
SMC438_002503 contig_175 - 55519 55538 + -26 -7 ATATACAAATCCCGTCAGAT 1 NesR
contig_173 + 5312 5331 CGATGGAGACATATGTATCT 1 NesR
SMC438_005631 contig_379 - 7691 7710 - -147 -128 TCACGCAGACCTATTTACAA 1 NesR
contig_379 + 10972 10991 ATGTCTAGCCATCTTTTAAT 1 NesR
SMC438_005610 contig_378 + 1317 1336 - -47 -28 ACATGAACACAGCGCAATAT 1 NesR
contig_371 - 8123 8142 ACCTCAACATCTATTTCGAC 1 NesR
contig_371 - 14547 14566 ATATAAAGACCTCTTTATAT 4 NesR
contig_371 + 14549 14568 ATAAAGAGGTCTTTATATGT 1 NesR
SMC438_005550 contig_371 + 15435 15454 - -186 -167 AGATCACGATGTTTTTAGGT 2 NesR
SMC438_005558 contig_371 + 26679 26698 + -51 -32 ACAACAAAATATCTATAGTT 1 NesR
SMC438_005557 contig_371 + 26679 26698 - -97 -78 ACAACAAAATATCTATAGTT 1 NesR
contig_370 + 2553 2572 GGCTGAAAACCTCTTTTTAT 1 NesR
SMC438_005496 contig_370 - 59724 59743 - -92 -73 ACATAAAGACATACACAGGA 2 NesR
SMC438_003791 contig_268 + 16472 16491 - -129 -110 GTCTGAAGACCTGTTGATTT 1 NesR
SMC438_003813 contig_268 + 34883 34902 + -28 -9 ATTTAAATAGCTATGTCTAG 1 NesR
SMC438_003815 contig_268 - 37166 37185 + -296 -277 CCATAAAGAAATCTAGATGC 2 NesR
SMC438_003816 contig_268 + 37166 37185 + -456 -437 GCATCTAGATTTCTTTATGG 2 NesR
contig_8 - 7466 7485 CTATAATGACAGACTTATCG 1 NesR
contig_265 - 2891 2910 ACCTAAAAACATCGTGATCT 2 NesR
SMC438_000046 contig_4 + 10131 10150 - -143 -124 AGATCAATATCTTTCTATTT 1 NesR
SMC438_000047 contig_4 - 10131 10150 - -371 -352 AAATAGAAAGATATTGATCT 1 NesR
contig_4 + 17750 17769 CGATAAACGTATCGTTATAG 1 NesR
SMC438_000066 contig_4 - 33341 33360 + -152 -133 GCTTAGCGCCCTCTTTATTT 1 NesR
SMC438_000083 contig_4 + 53080 53099 - -557 -538 GCATGAAGACGTAATTACTT 1 NesR
SMC438_000084 contig_4 + 53080 53099 + -302 -283 GCATGAAGACGTAATTACTT 1 NesR
contig_465 - 90 109 ATATAACGGGACCCTTATGC 2 NesR
contig_464 + 6717 6736 GCAGAAATTTCTATTTATCC 1 NesR
SMC438_006774 contig_464 - 14625 14644 + -51 -32 AGGTAAAGAATCAATTATGT 1 NesR
contig_184 + 420 439 ATTTAACAGTACCTTTAGGC 1 NesR
contig_184 + 54590 54609 GTATCAAGACCTCTTTGCAC 2 NesR
contig_185 - 2877 2896 ATGTTGAAATCTATATATAG 1 NesR
contig_185 - 2879 2898 AGATGTTGAAATCTATATAT 1 NesR
contig_296 + 4778 4797 ACATACAGATCTCTTCAAAC 2 NesR
contig_296 + 7566 7585 CGCGAGCGATCTCTTTATGT 1 NesR
SMC438_005075 contig_344 - 4495 4514 + -262 -243 ACTTAACAACCTATCAATAT 1 NesR
SMC438_005076 contig_344 - 4495 4514 - -84 -65 ACTTAACAACCTATCAATAT 1 NesR
SMC438_005094 contig_344 - 21587 21606 + -573 -554 ATAAACATATCTTTATGTGT 1 NesR
SMC438_005094 contig_344 + 21589 21608 - -575 -556 ACATAAAGATATGTTTATGT 3 NesR
SMC438_005008 contig_341 + 1793 1812 - -62 -43 ATGCAAAGGCAGCCGTATAT 1 NesR
SMC438_004000 contig_284 + 937 956 - -353 -334 ATAGAAAATAATATTTACCT 1 NesR
contig_191 + 11066 11085 ACAGCAAAACCCCTTCATGC 1 NesR
contig_192 - 110 129 ATGCACATATCTCTTGTTGT 1 NesR
contig_195 + 1088 1107 ACGAAACGGTATATGCATAT 1 NesR
SMC438_003153 contig_215 - 10964 10983 - -86 -67 ATGTATAGACATGTTGTTGA 1 NesR
SMC438_003152 contig_215 - 10964 10983 + -64 -45 ATGTATAGACATGTTGTTGA 1 NesR
contig_78 + 4960 4979 ACATGACGGCATAATGTTAT 1 NesR
SMC438_001682 contig_110 + 34933 34952 + -380 -361 ATTTCATAATAGATATATAT 1 NesR
SMC438_001681 contig_110 + 34933 34952 - -107 -88 ATTTCATAATAGATATATAT 1 NesR
SMC438_004114 contig_290 + 6735 6754 + -287 -268 ACCTGAAAACATCGTGATCT 1 NesR
contig_290 + 7705 7724 TTCTGAAGCTGAATTTATAT 1 NesR
contig_291 - 5453 5472 ACCTAAAAACATCGTGATTC 1 NesR
contig_77 + 3735 3754 ACAGCAAGATCTCATGAAAT 2 NesR
contig_116 - 7064 7083 ACATCCACACCTATGTCGAT 1 NesR
contig_14 + 15940 15959 ATCGAAAGCCACACTGATGT 1 NesR
SMC438_000211 contig_16 - 18962 18981 - -141 -122 ATATAGTGAACCCTATATGC 1 NesR
SMC438_000210 contig_16 - 18962 18981 + -468 -449 ATATAGTGAACCCTATATGC 1 NesR
SMC438_000211 contig_16 + 18964 18983 + -139 -120 ATATAGGGTTCACTATATTT 1 NesR
contig_448 + 8438 8457 ACCCAAAAACATCGTGATCT 1 NesR
SMC438_006177 contig_422 - 14955 14974 + -170 -151 ACACGACGACATACCCATGT 1 NesR
contig_446 + 14708 14727 GCCTCAAAACATCTTTCGAT 1 NesR
contig_201 - 4825 4844 ACTTCAACATCTCGTTCGAT 1 NesR
contig_203 + 16 35 ACCTAAAAACATCGTGATCC 1 NesR
SMC438_002984 contig_203 - 1027 1046 - -138 -119 ATTTAAAGAAAAATATGCAT 1 NesR
SMC438_006888 contig_475 + 4799 4818 - -71 -52 ACACCAATACATATTCTCGT 1 NesR
contig_288 - 1588 1607 ATATGAATATCTCCCAATAC 1 NesR
SMC438_004466 contig_325 - 22354 22373 + -58 -39 ATATCGAAAAATATTACTGT 1 NesR
contig_129 + 17200 17219 ATCGAAGCACATATTCATGC 1 NesR
contig_129 - 61254 61273 ACATAAATGTCTCCTTCTCT 2 NesR
SMC438_001968 contig_129 + 67587 67606 - -254 -235 ACGTCAACGACTATTTGTAT 1 NesR
SMC438_001839 contig_124 - 3930 3949 + -57 -38 ACGTCAAGATACATTGGAGT 1 NesR
SMC438_001840 contig_124 - 3930 3949 - -76 -57 ACGTCAAGATACATTGGAGT 1 NesR
contig_127 + 7153 7172 GCAAGACGACCTGTTTCTAT 1 NesR
contig_478 - 4657 4676 TCATCGAAACGTATTTCTGT 1 NesR
contig_435 - 99 118 ATTTCCAGATCTAACTATCT 1 NesR
SMC438_006403 contig_435 + 5907 5926 + -105 -86 ATACGCATACCTCCTAATAT 1 NesR
contig_433 - 839 858 ACAGAAAGGTCTACCTATGA 2 NesR
SMC438_001366 contig_93 - 14653 14672 + -32 -13 AAATCAAGACATAGTCCTGG 1 NesR
SMC438_001367 contig_93 - 14653 14672 - -73 -54 AAATCAAGACATAGTCCTGG 1 NesR
SMC438_002031 contig_132 - 16478 16497 - -61 -42 ACAAAAAGACATTTGCAAGC 1 NesR
SMC438_002030 contig_132 - 16478 16497 + -86 -67 ACAAAAAGACATTTGCAAGC 1 NesR
SMC438_004668 contig_337 - 33717 33736 + -259 -240 AAGTAAAGTTTAGTTTATTT 1 NesR
SMC438_004669 contig_337 + 33717 33736 + -90 -71 AAATAAACTAAACTTTACTT 1 NesR
contig_337 - 92076 92095 TCATCACGATATCTCGATGA 1 NesR
contig_337 + 107615 107634 GCATAATGATGAAGTTATAT 2 NesR
SMC438_004739 contig_337 - 112454 112473 + -238 -219 ATATCGAGACAAATCTTTGC 1 NesR
SMC438_004740 contig_337 - 113714 113733 + -115 -96 ATCAATAGAGCGATTTTTGT 1 NesR
contig_331 + 12211 12230 ATTTGAAGTTCTCCTTATTC 1 NesR
SMC438_004574 contig_331 + 14363 14382 - -398 -379 TCATAGTGATGTCTCTTTGT 1 NesR
SMC438_004581 contig_331 + 20202 20221 - -68 -49 AGATCAAAATCTAATTAGGA 1 NesR
contig_94 - 15081 15100 GGATGCGGACATCTTTCTGT 1 NesR
contig_94 - 17481 17500 TCCTGACGATATCTATATTT 1 NesR
contig_134 - 20378 20397 TCACAGAGACCTTTTTCGAT 1 NesR
SMC438_001459 contig_98 + 1832 1851 + -101 -82 ATAAAACGATCTATCGGTTT 1 NesR
SMC438_004792 contig_339 - 887 906 - -62 -43 ATGCAAAGGCAGCCGTATAT 1 NesR
contig_339 - 56115 56134 GCTTAAAGACCGCCTTGCAT 1 NesR
contig_339 + 56571 56590 CCATGAAGATTTCCTTCCGT 1 NesR
contig_339 + 79525 79544 ATATATCGATTTCATCACAT 1 NesR
contig_339 + 133401 133420 ATTTGAAGCCGTATTTATGC 2 NesR
contig_339 - 167178 167197 ACAGGAAGACCTCCCGATGG 1 NesR
contig_339 - 179444 179463 ATTTAAAGGCCTCTCAATTT 1 NesR
SMC438_000478 contig_31 + 2634 2653 + -83 -64 TCATCGAGACGTCATCATGT 1 NesR
SMC438_005770 contig_387 - 3617 3636 - -53 -34 ATGTGAAAATGTACATATGT 1 NesR
SMC438_005769 contig_387 - 3617 3636 + -108 -89 ATGTGAAAATGTACATATGT 1 NesR
SMC438_003251 contig_223 + 8222 8241 - -35 -16 ATTCATAGATCGCCTTATAA 1 NesR
SMC438_003253 contig_223 + 11427 11446 - -74 -55 CTATACAGATAAATTTCTGT 2 NesR
SMC438_003254 contig_223 - 11427 11446 - -404 -385 ACAGAAATTTATCTGTATAG 2 NesR
contig_427 - 38 57 ATAGAAAGCTCTCCGTCTGT 2 NesR
contig_426 + 38 57 ACAGACGGAGAGCTTTCTAT 2 NesR
contig_426 + 30975 30994 CTTCAACAATCTCTTCATGT 1 NesR
contig_227 - 862 881 TGATAAATACCTGTTCATCT 1 NesR
contig_307 - 140 159 TCGGAAAGACAGATATAGAT 1 NesR
contig_80 + 11015 11034 ATATACAGACGCCAATGTAT 1 NesR
contig_84 - 20899 20918 ATATCCAGACGAACTTATTT 1 NesR
contig_84 + 49665 49684 TCATAGAAACCTCCTTGGAT 1 NesR
contig_84 - 82414 82433 ACATCAAGAGCCCTTCAGGC 1 NesR
SMC438_001251 contig_84 - 85468 85487 - -22 -3 ACTGAGAGTCCTATGTATTT 1 NesR
contig_88 - 135 154 ATCCGAAGCCCTCTCTATAA 1 NesR
SMC438_000286 contig_20 + 14477 14496 + -31 -12 ATTTTAGGACCTCCCGATGT 1 NesR
contig_22 - 1482 1501 ACCTATAAACATCGTGATCT 1 NesR
SMC438_006122 contig_416 + 5032 5051 + -139 -120 ACATACACATCGCTTTTCAG 1 NesR
contig_26 - 10146 10165 GCAGAAAGGTCAGATTATGT 1 NesR
SMC438_000427 contig_28 + 20300 20319 - -68 -49 ACATTAAGACCGCACTCGAT 1 NesR
contig_28 - 23415 23434 AGATTAATCCATCTGGATGT 1 NesR
contig_28 + 30553 30572 TCATGAGCACATCTGAATGT 1 NesR
contig_28 - 30586 30605 ACACAAACATCTGTTGACAT 2 NesR
contig_483 - 6924 6943 CCATGACGACATATTCGCGT 1 NesR
contig_483 - 9236 9255 TGCTAACGGTATCTTTGTGT 1 NesR
contig_395 - 5512 5531 ACATCCCGGTCTTTTGATGT 1 NesR
SMC438_006088 contig_414 - 21423 21442 + -77 -58 TAAAATTGATCGATTTATGT 1 NesR
SMC438_006089 contig_414 - 21423 21442 - -66 -47 TAAAATTGATCGATTTATGT 1 NesR
contig_414 + 25094 25113 ACCGGAAGAACTATTTCTAT 1 NesR
contig_258 + 9545 9564 ATTTAACCGTATACTTATCA 1 NesR
SMC438_003606 contig_257 + 19311 19330 + -124 -105 GCGCAAAAACCTCTTTCCGT 1 NesR
contig_257 - 21577 21596 GCGAAAGGATATCCTTATGG 1 NesR
SMC438_003612 contig_257 - 24646 24665 - -254 -235 ATATAATTTCAAATATAAAT 1 NesR
SMC438_003612 contig_257 + 24670 24689 + -230 -211 ATATTTAGTAATGTTTATAG 1 NesR
SMC438_003611 contig_257 + 24670 24689 - -203 -184 ATATTTAGTAATGTTTATAG 1 NesR
SMC438_003612 contig_257 - 24737 24756 - -163 -144 ATAGAAGGTTATGTCCATAT 1 NesR
SMC438_003611 contig_257 - 24737 24756 + -270 -251 ATAGAAGGTTATGTCCATAT 1 NesR
contig_255 - 3205 3224 TCATAACGACCTATTTCTCC 1 NesR
contig_252 + 9036 9055 ATATCAAAACAAATTTTCAA 1 NesR
contig_399 + 16060 16079 AGACCAAGACAATTTTAGGT 1 NesR
SMC438_005881 contig_398 - 23940 23959 + -192 -173 ACAAAAAGACTTTCTGATAT 2 NesR
SMC438_005882 contig_398 + 23940 23959 + -166 -147 ATATCAGAAAGTCTTTTTGT 2 NesR
SMC438_004385 contig_317 + 866 885 + -244 -225 AGATCACGATGTTTTTAGGT 2 NesR
SMC438_004384 contig_317 + 866 885 - -553 -534 AGATCACGATGTTTTTAGGT 2 NesR
SMC438_004353 contig_315 + 426 445 - -66 -47 ACATAAAGATATCTTTATGT 4 NesR
SMC438_004366 contig_315 + 14098 14117 + -175 -156 CAGGAAAGATCGCATTATGT 1 NesR
SMC438_004338 contig_314 + 4939 4958 - -42 -23 ACTGAAAGATAGCTTAACTT 1 NesR
SMC438_004339 contig_314 + 4939 4958 + -102 -83 ACTGAAAGATAGCTTAACTT 1 NesR
contig_155 + 1197 1216 ATATTTGGATCTCTCTTTGC 1 NesR
contig_153 + 2425 2444 TCATTGAGATATCTCGAGAT 1 NesR
SMC438_003494 contig_251 - 26182 26201 - -93 -74 ACGGGAAGATCTCTGGAAGT 1 NesR
contig_56 - 2551 2570 ATATACGGGCCCATATTTAT 1 NesR
contig_56 + 4047 4066 AGCCAAAGATATTTATAAGT 1 NesR
contig_56 + 4858 4877 ACAGAAATATCTCTTGCTGT 2 NesR
contig_56 + 5155 5174 AAATAAAGATCTCTCGACAC 2 NesR
SMC438_000774 contig_50 + 1685 1704 - -55 -36 ACAGCCGAATCTCTTTTTGT 1 NesR
SMC438_000774 contig_50 - 1710 1729 + -80 -61 ACCTAAAGACATCGTGATCT 2 NesR
SMC438_005972 contig_407 + 941 960 - -353 -334 ATAGAAAATAATATTTACCT 1 NesR
SMC438_005973 contig_407 - 2170 2189 - -145 -126 ACATGGTGACCTGTTTCTGT 1 NesR
contig_407 + 3878 3897 GCAAAAAGACATGACTACAT 1 NesR
SMC438_000922 contig_64 + 3166 3185 + -277 -258 GTAAAAAGCCATGTTGTTGT 1 NesR
SMC438_005951 contig_404 - 6030 6049 - -73 -54 ACAGAAAAACGGATTTCTAT 2 NesR
SMC438_005950 contig_404 - 6030 6049 + -226 -207 ACAGAAAAACGGATTTCTAT 2 NesR
SMC438_005958 contig_404 - 14572 14591 + -338 -319 ATATGTTCATATATCAATAT 1 NesR
SMC438_005959 contig_404 - 14580 14599 - -583 -564 ATTTTATGATATGTTCATAT 2 NesR
SMC438_005958 contig_404 + 14580 14599 - -346 -327 ATATGAACATATCATAAAAT 2 NesR
contig_249 + 10899 10918 ACATCAAGACCTCGCTGTTC 1 NesR
SMC438_003451 contig_249 + 18070 18089 + -94 -75 ATATAAAGATATATTTATGT 4 NesR
contig_400 - 15676 15695 ACACAAAAACATCATTCGGC 1 NesR
contig_450 - 2542 2561 ACGTTAAGCCCATTTCATAT 1 NesR
contig_241 - 737 756 GCATCAACACCGATGTATCT 1 NesR
SMC438_000966 contig_66 - 8106 8125 - -208 -189 ATATAAACGTAAGTATCTAT 1 NesR
contig_63 - 4695 4714 CTTTACAGTCAACTTGATGT 1 NesR
SMC438_003371 contig_242 - 2587 2606 - -152 -133 ATGTATATGCACATGTATAT 1 NesR
SMC438_003370 contig_242 - 2587 2606 + -35 -16 ATGTATATGCACATGTATAT 1 NesR
contig_266 - 740 759 ATACAATGATCGATTTTTGA 2 NesR
SMC438_002302 contig_160 - 13773 13792 - -69 -50 GTATAAAATCTACTTTATAC 1 NesR
SMC438_002301 contig_160 - 13773 13792 + -38 -19 GTATAAAATCTACTTTATAC 1 NesR
SMC438_002340 contig_163 - 7710 7729 + -126 -107 ATATATAGCTTTATTTGAAA 1 NesR
SMC438_002340 contig_163 + 7714 7733 - -130 -111 AAATAAAGCTATATATACTA 1 NesR
contig_164 + 108 127 CTATAGAGATAAGGTTCTAA 1 NesR
SMC438_002349 contig_164 + 860 879 + -146 -127 AGCTAGATATATCTTGACAT 2 NesR
contig_164 + 1570 1589 ATCTGGACCTATATCTATGT 1 NesR
SMC438_007039 contig_480 - 22413 22432 - -72 -53 AGATATAGCTTTCTTTATAC 2 NesR
contig_368 + 197 216 CCAAGAAGATCGCATAATGT 1 NesR
contig_369 - 14999 15018 TTACGGAGATATATTCATGG 1 NesR
SMC438_005426 contig_369 - 32291 32310 + -253 -234 CTAAAACGATCGCATAATGT 1 NesR
SMC438_005432 contig_369 + 35511 35530 - -113 -94 ACTTAAATATATCGCGATAA 2 NesR
SMC438_005433 contig_369 - 35511 35530 - -51 -32 TTATCGCGATATATTTAAGT 2 NesR
contig_369 - 37098 37117 ATAGAGAGGTATCCCTATGG 1 NesR
contig_328 - 8553 8572 TCATAGAGACCTCCGGCTGT 1 NesR
contig_363 + 887 906 ATATCATGGTCTATCTGCAT 1 NesR
contig_360 - 3983 4002 AAGGAAAAACCTATTTCCGT 1 NesR
SMC438_005360 contig_365 + 6580 6599 - -56 -37 GCAAAACGTCCTCTTCATTT 1 NesR
SMC438_005361 contig_365 + 6580 6599 + -198 -179 GCAAAACGTCCTCTTCATTT 1 NesR