https://github.com/combogenomics/rhizoreg
Tip revision: 1a4e3c93b80528b764f829ac7e50f07592e2550c authored by Marco Galardini on 14 March 2015, 10:21:57 UTC
README updated
README updated
Tip revision: 1a4e3c9
literature_CFN42_RbtR.tab
NC_007763.1 - 5482 5501 CTGAGAAATCGAAACCGCAA 1 RbtR
NC_007763.1 + 6839 6858 TAGCGGCATCGATGCCGCAA 2 RbtR
NC_007763.1 + 50865 50884 AAGCGATATCGACGTTTCAG 1 RbtR
NC_007763.1 - 94044 94063 ATCCACAATCAATGTTGCTC 1 RbtR
NC_007763.1 - 129798 129817 CGGCGCCATCGAAAGCGCCA 1 RbtR
NC_007763.1 + 145171 145190 CATCAATCTCGATATTGCCA 1 RbtR
NC_007763.1 + 168506 168525 TGGCACGATCCATGTCGCTG 1 RbtR
NC_007763.1 - 172965 172984 CGGCGAAACCAATAGTTCAT 1 RbtR
NC_007763.1 - 179263 179282 TCGCTCTATCCACTGTTCAA 1 RbtR
RHE_PA00017 NC_007762.1 - 19248 19267 + -22 -3 TCGCTCAATTGATGGAGTAA 1 RbtR
NC_007762.1 + 29961 29980 CGGCTAAATCGATCCTGCTG 1 RbtR
NC_007762.1 - 47197 47216 AAGCAACATCAATGTATCCT 2 RbtR
NC_007762.1 + 76001 76020 AGGCTTCATCGATGGCGCAC 2 RbtR
RHE_PA00090 NC_007762.1 + 100961 100980 + -213 -194 TAGCACAGTGGAAGGCGCAT 1 RbtR
NC_007762.1 + 112175 112194 CGGCAAAATCGAAAGCGGCA 1 RbtR
RHE_PA00110 NC_007762.1 - 118793 118812 - -95 -76 TAGCTCCTTCTATGTCGCTT 1 RbtR
RHE_PA00109 NC_007762.1 + 118793 118812 - -172 -153 AAGCGACATAGAAGGAGCTA 1 RbtR
NC_007762.1 - 128641 128660 GAGCAAAATCGATTTAGAAC 1 RbtR
NC_007762.1 - 132104 132123 CTGCTCTCTCGATTGTGCAG 2 RbtR
NC_007762.1 + 167713 167732 AACCACATTCGATTTCGCCA 1 RbtR
NC_007764.1 + 44797 44816 TAGGAAAATCGATGTCACTA 1 RbtR
RHE_PC00078 NC_007764.1 + 80130 80149 + -90 -71 TTGAACATTCCGTTTTGCAA 1 RbtR
RHE_PC00077 NC_007764.1 + 80130 80149 - -389 -370 TTGAACATTCCGTTTTGCAA 1 RbtR
NC_007764.1 + 82175 82194 CGGCGCCATCGATGGCGCCG 2 RbtR
NC_007764.1 - 82731 82750 ATGATAAATGAATTGAGCAG 1 RbtR
NC_007764.1 + 110653 110672 TGTCGAAATCGACAGTGCCG 1 RbtR
NC_007764.1 + 121788 121807 AGGCGAGATCGATGGCGCCG 2 RbtR
NC_007764.1 + 124216 124235 TTCATCCAGCGATAGCGCTT 1 RbtR
NC_007764.1 + 124967 124986 TTTCGACATCGATATTGCCA 2 RbtR
NC_007764.1 + 157002 157021 GGTCGCAATCGATGGTGCTT 3 RbtR
NC_007764.1 - 168746 168765 TGGCGCCAGGGATGGCGCCT 1 RbtR
NC_007761.1 - 10424 10443 CTGAAATTTCGATGTCGCCT 2 RbtR
NC_007761.1 + 32741 32760 AGGCGATATCGAGTTCCCAG 1 RbtR
NC_007761.1 + 104100 104119 CGGCGAAATCGATATAGCGG 2 RbtR
NC_007761.1 + 121350 121369 ATTCGCCATTGATGTAGCCG 1 RbtR
NC_007761.1 + 241636 241655 GAGCGAAATCGATGGAGCTG 2 RbtR
RHE_CH00235 NC_007761.1 - 251941 251960 + -169 -150 TGGCTCAACCTATTGTGTCA 1 RbtR
RHE_CH00236 NC_007761.1 - 251941 251960 - -66 -47 TGGCTCAACCTATTGTGTCA 1 RbtR
NC_007761.1 + 290076 290095 ATGCAACATCGATAGCAGTA 1 RbtR
NC_007761.1 + 330633 330652 TTGCATTATCCATGGCGCCG 2 RbtR
RHE_CH00364 NC_007761.1 - 376398 376417 - -59 -40 TGGCAAAAGGGAATTTGCAA 1 RbtR
RHE_CH00363 NC_007761.1 + 376398 376417 - -69 -50 TTGCAAATTCCCTTTTGCCA 1 RbtR
NC_007761.1 + 377094 377113 CTGCGCAAACAATTGAGCCG 1 RbtR
NC_007761.1 + 381914 381933 AAGCACGATCGAGGTCGCTT 1 RbtR
RHE_CH00432 NC_007761.1 + 447431 447450 - -94 -75 AAGTACAATCGATGTCGCAC 1 RbtR
RHE_CH00503 NC_007761.1 - 521445 521464 + -456 -437 TAGCTCAGTCGGTAGAGCAC 1 RbtR
NC_007761.1 + 527044 527063 AGACACCATCGACATCGCAA 1 RbtR
NC_007761.1 + 588340 588359 AGGAACAAGAGATAGATCCA 1 RbtR
RHE_CH00580 NC_007761.1 - 603586 603605 - -21 -2 AGGCTCAATCCCTAGAGCAG 1 RbtR
NC_007761.1 + 635006 635025 CCGCACCATCGATATCGACA 1 RbtR
NC_007761.1 - 664041 664060 CTGAACCATTGCTTGCGCAT 1 RbtR
NC_007761.1 + 681218 681237 ATGCCAAGTCGATTTCGCAG 2 RbtR
RHE_CH00694 NC_007761.1 - 712133 712152 - -107 -88 AGGCAATATCAAATTTGCAA 1 RbtR
RHE_CH00721 NC_007761.1 + 751957 751976 + -97 -78 CCGCACAATTTATGTTGCAA 1 RbtR
RHE_CH00720 NC_007761.1 - 751957 751976 + -135 -116 TTGCAACATAAATTGTGCGG 1 RbtR
RHE_CH00721 NC_007761.1 - 751976 751995 - -78 -59 TAGAGCATTCCATTGTGCAT 2 RbtR
RHE_CH00720 NC_007761.1 + 751976 751995 - -154 -135 ATGCACAATGGAATGCTCTA 2 RbtR
NC_007761.1 + 806959 806978 TGGCTATATCGGTACTGCTA 1 RbtR
RHE_CH00783 NC_007761.1 - 822507 822526 + -126 -107 CTGCTCTCTCGATTGTGCAG 1 RbtR
NC_007761.1 + 878967 878986 AAGCGCAGTCGATAGCCCCA 1 RbtR
NC_007761.1 + 911344 911363 ATGAATAATCGATGTTGACT 1 RbtR
NC_007761.1 + 924080 924099 TGGCTATATCGATCTCACCA 1 RbtR
NC_007761.1 - 926836 926855 CAGCAACGGCGATTGCGCCA 1 RbtR
NC_007761.1 + 1019305 1019324 TGGCGAAATCAATGTAGCTT 2 RbtR
NC_007761.1 + 1104650 1104669 ATGCAATCCCGAGTGAGCAA 1 RbtR
RHE_CH01069 NC_007761.1 + 1124739 1124758 + -209 -190 TCGAGCTATCAATGTTGCCT 1 RbtR
RHE_CH01068 NC_007761.1 - 1124739 1124758 + -64 -45 AGGCAACATTGATAGCTCGA 1 RbtR
NC_007761.1 - 1153505 1153524 CGGCGCTATCGAAATATCTG 1 RbtR
NC_007761.1 + 1167249 1167268 CAGAGCCATCAATGGCGCAA 2 RbtR
NC_007761.1 + 1183506 1183525 AGGCGACATCGATGGTGATG 2 RbtR
RHE_CH01151 NC_007761.1 + 1204227 1204246 - -179 -160 TCGCGCCCTCGATATTTCAA 2 RbtR
NC_007761.1 + 1288173 1288192 ATGAAATTTCCATTGTTCAT 1 RbtR
RHE_CH01240 NC_007761.1 + 1294286 1294305 + -51 -32 TCGCACTATCGAATTAACAA 1 RbtR
NC_007761.1 - 1336028 1336047 CAGCGTCAGCGATTGTTCCA 1 RbtR
RHE_CH01301 NC_007761.1 - 1354892 1354911 + -66 -47 TTGCAGAATCAATGTTGCAC 1 RbtR
NC_007761.1 + 1355943 1355962 CTGCACAGTCCATTGCGCGA 1 RbtR
NC_007761.1 - 1440292 1440311 TGGCGCCATGGATGGTGACG 1 RbtR
NC_007761.1 - 1440970 1440989 TGGCGCCATGGATGGTGACG 1 RbtR
NC_007761.1 + 1469979 1469998 CGGCGACACCGATATCTCAG 1 RbtR
NC_007761.1 - 1525756 1525775 TTGCACAAGCGATTGGTCAT 2 RbtR
NC_007761.1 - 1538674 1538693 ATACAATCTCGATATCGCCA 1 RbtR
NC_007761.1 - 1574824 1574843 CGGCACAATCGACATTTCGG 1 RbtR
NC_007761.1 - 1576088 1576107 TGTCGCCATCGATATTGCCG 1 RbtR
NC_007761.1 + 1665408 1665427 TGAAAACATCGATCGAGCAT 1 RbtR
NC_007761.1 + 1676487 1676506 CGGCGCAGTCGATTGCGGCA 2 RbtR
NC_007761.1 - 1686282 1686301 AGACGATATCGAGTGAGCCA 1 RbtR
NC_007761.1 - 1735466 1735485 CGGCAACATCTATCTTGCAA 2 RbtR
NC_007761.1 - 1745328 1745347 ATGGAATATCGATGGTTTCG 1 RbtR
NC_007761.1 + 1751861 1751880 AGCAGATATCGAAGGTGCAA 1 RbtR
NC_007761.1 - 1814473 1814492 CGGCAATATCGATCTTGTAG 1 RbtR
NC_007761.1 + 1820374 1820393 TTTCAACTTCGATGGAGCTG 1 RbtR
NC_007761.1 + 1844932 1844951 GAGCGCCATCGATGTAACCA 1 RbtR
RHE_CH01767 NC_007761.1 + 1855041 1855060 - -30 -11 TTGATACAGCGAAAGAGCAT 1 RbtR
NC_007761.1 - 1881875 1881894 TTGCCGAAACGATTGCGCAA 1 RbtR
NC_007761.1 - 1945571 1945590 CTGGACAATAGATAGGTCAA 1 RbtR
NC_007761.1 - 1954539 1954558 CGGAACATTCGATGACGCAA 1 RbtR
NC_007761.1 - 1999472 1999491 CGGCGAGATCGATGGGGCAA 2 RbtR
NC_007761.1 + 2025776 2025795 CTGCACCATCAATTTCTTCA 1 RbtR
NC_007761.1 - 2099701 2099720 ATGCACAATCTATATGTCTA 1 RbtR
NC_007761.1 - 2153370 2153389 TGGCGATATCGATGTCGCCG 1 RbtR
NC_007761.1 + 2164957 2164976 TGGCAACGTTGATGGTGCCG 1 RbtR
NC_007761.1 + 2173603 2173622 CAGCGCTATCTATTATGCCG 1 RbtR
NC_007761.1 - 2243491 2243510 TGGCGAAATCGAAGCCGCCA 1 RbtR
NC_007761.1 + 2256077 2256096 ATGCACCGTCGGTGTTGCAA 2 RbtR
RHE_CH02156 NC_007761.1 - 2262105 2262124 + -79 -60 TTGCCATCTCGATTTCGCCG 1 RbtR
NC_007761.1 + 2287274 2287293 CTGCTCCATCGCATGCGCAA 2 RbtR
NC_007761.1 + 2300274 2300293 CGGCGAAATCGAATTCGCTG 2 RbtR
NC_007761.1 + 2338162 2338181 TTGAACCAGCGATCGAGCCG 1 RbtR
NC_007761.1 + 2367785 2367804 TTGCACTATGAAGTGCGCCA 1 RbtR
NC_007761.1 + 2411695 2411714 TGGCAAAATCGGGATTGCCT 1 RbtR
NC_007761.1 + 2490118 2490137 CGGCACCATCGAGCGCGCCA 2 RbtR
NC_007761.1 + 2492978 2492997 TGGCCCCATCGACGTAGCCG 1 RbtR
NC_007761.1 + 2532444 2532463 CTTCGACATCGATATCGCCA 2 RbtR
NC_007761.1 - 2551838 2551857 GTCAGACATCGATTTCGCCA 1 RbtR
RHE_CH02462 NC_007761.1 - 2574965 2574984 - -578 -559 TGGGGAAATCGATTGATCTA 2 RbtR
RHE_CH02461 NC_007761.1 + 2574965 2574984 - -58 -39 TAGATCAATCGATTTCCCCA 2 RbtR
NC_007761.1 + 2589504 2589523 CGGCAAAATCGGTAGCGGCA 1 RbtR
NC_007761.1 - 2594934 2594953 TGTCGCAATCGGTAGCGCCG 1 RbtR
RHE_CH02484 NC_007761.1 + 2596247 2596266 - -113 -94 AAGCGGATTCGATTTCGCAG 1 RbtR
NC_007761.1 + 2606594 2606613 TTTCACCATCGATATCGGCA 2 RbtR
NC_007761.1 + 2684479 2684498 TTGCCCTATCGATGGCGACG 1 RbtR
NC_007761.1 - 2808659 2808678 AAGCGCGATCGATGCTGCCA 1 RbtR
NC_007761.1 + 2889405 2889424 ATGCCCCAGCGATTGAGCTA 2 RbtR
NC_007761.1 + 2893859 2893878 CTGCAACGGCGATTGTGCCA 2 RbtR
RHE_CH02824 NC_007761.1 + 2946592 2946611 - -60 -41 CAGCGAAATCGATCGGTCAA 1 RbtR
RHE_CH02825 NC_007761.1 - 2946592 2946611 - -91 -72 TTGACCGATCGATTTCGCTG 1 RbtR
NC_007761.1 - 2983901 2983920 ATGCGAACGCGATGTCGCTT 1 RbtR
NC_007761.1 - 3024540 3024559 TCGAAAACTCGATGGTGCCG 1 RbtR
NC_007761.1 - 3051853 3051872 CGGCTCTAACCATTGAGCTA 1 RbtR
NC_007761.1 - 3069837 3069856 TTTATCAATCGATTGGGGCA 1 RbtR
NC_007761.1 + 3109851 3109870 CGGCGCTGGCGATTGCGCAT 1 RbtR
NC_007761.1 - 3142031 3142050 CGGAGACATCGATTGCGACA 2 RbtR
NC_007761.1 - 3190205 3190224 CAGCGATATCGATATCGCCA 2 RbtR
NC_007761.1 - 3204658 3204677 GAGCGCCATCGATGGAGAAG 1 RbtR
NC_007761.1 + 3224145 3224164 TTGCAACGTGGATTTAGCGT 1 RbtR
NC_007761.1 - 3311100 3311119 TTGCTATCGCGATTTCGCCG 1 RbtR
NC_007761.1 - 3325806 3325825 TTGAAATACCGATTGTCCGA 1 RbtR
NC_007761.1 + 3367913 3367932 TGGCGATATCGCTTGTGATA 1 RbtR
NC_007761.1 + 3386620 3386639 CTGCTCTACCGACGTCGCTA 1 RbtR
NC_007761.1 + 3387780 3387799 CTGCGATATCGTCTTTGCAA 1 RbtR
NC_007761.1 + 3397725 3397744 TGGCAAAATTGATGGCTGTT 1 RbtR
RHE_CH03274 NC_007761.1 + 3436857 3436876 - -89 -70 TTCCACTATCGATATCGCTG 2 RbtR
RHE_CH03275 NC_007761.1 - 3436857 3436876 - -177 -158 CAGCGATATCGATAGTGGAA 2 RbtR
NC_007761.1 + 3475423 3475442 TTACGAAATCGATTGAGCCC 2 RbtR
RHE_CH03337 NC_007761.1 - 3500092 3500111 - -91 -72 CTTAACAATCGGTTTACCAA 1 RbtR
RHE_CH03336 NC_007761.1 - 3500092 3500111 + -122 -103 CTTAACAATCGGTTTACCAA 1 RbtR
NC_007761.1 - 3628144 3628163 AGGAGCGATCGATTTTTCGA 1 RbtR
NC_007761.1 - 3712061 3712080 CGGAGCAATCGATATCGTCA 2 RbtR
NC_007761.1 - 3750006 3750025 TAGAAACGTCGATTTCGTCA 1 RbtR
NC_007761.1 - 3822265 3822284 CGGCAATATCGAGGGCGCTG 2 RbtR
NC_007761.1 - 3840544 3840563 TTCCAATTTCGATTGCGCAT 2 RbtR
NC_007761.1 + 3850653 3850672 ATGAGATAGCGATGTTGCCC 1 RbtR
NC_007761.1 - 3872065 3872084 CCGAAATAGCGATAGAGCAG 1 RbtR
NC_007761.1 + 3978656 3978675 CTGAGCAATCGCCAGTTCAT 1 RbtR
NC_007761.1 + 4043125 4043144 AAGAGCAATCGACGCCGCAT 1 RbtR
NC_007761.1 - 4052431 4052450 TGGCAATCGCGATTGCGCCG 1 RbtR
NC_007761.1 + 4138539 4138558 CGGCAATATCGAGGGCGAAA 1 RbtR
RHE_CH03922 NC_007761.1 - 4152924 4152943 + -75 -56 CAGCAGAACCGATTTTTCAT 1 RbtR
NC_007761.1 + 4183838 4183857 TTGATCATTCGATATCTCCG 2 RbtR
RHE_CH03965 NC_007761.1 + 4190532 4190551 + -214 -195 ATCAAAAATCGCTATATCCA 1 RbtR
NC_007761.1 + 4198716 4198735 CGGCTCCATCGATGGCTCCA 1 RbtR
NC_007761.1 - 4200610 4200629 CGGGGCAATCGATTTTGCCG 2 RbtR
NC_007761.1 + 4218057 4218076 TTGCAGAATCCATACAGCAG 1 RbtR
NC_007761.1 + 4224496 4224515 GGGCGCAATCGAGATCGCAA 1 RbtR
NC_007761.1 - 4229914 4229933 TGGAAAAATCGATGCTGTAG 1 RbtR
NC_007761.1 + 4328438 4328457 ATGAACCATCGAGGGCTAAG 1 RbtR
NC_007761.1 - 4350831 4350850 ATGGACGATCGATTTTACAT 1 RbtR
NC_007761.1 - 4358192 4358211 TTCATCCATCCATTGTTCTG 1 RbtR
NC_007765.1 - 18377 18396 ATCCGAAATCGACGGCGCAT 2 RbtR
RHE_PE00063 NC_007765.1 + 76403 76422 - -174 -155 ACGCGGAATCGATGGCGCCG 2 RbtR
NC_007765.1 + 124504 124523 CAGCTCAATAGAGAGCGCTA 1 RbtR
NC_007765.1 - 202293 202312 AGGACAAATCGATATACCAA 1 RbtR
RHE_PE00185 NC_007765.1 + 214455 214474 + -64 -45 TTGCACAATCGAATATTGAT 1 RbtR
RHE_PE00184 NC_007765.1 + 214455 214474 - -198 -179 TTGCACAATCGAATATTGAT 1 RbtR
NC_007765.1 - 260422 260441 TAGCGATATCGTATTTGCCG 1 RbtR
NC_007765.1 + 292402 292421 AGGCTATATCGACATTGCCG 2 RbtR
NC_007765.1 - 320792 320811 CGGCAATAACGACTTCGCAG 1 RbtR
NC_007765.1 + 348847 348866 TGGAACAATCGTTGTCGTCA 1 RbtR
NC_007765.1 + 403295 403314 CAGCGCGAGCGATGGTGCCA 2 RbtR
NC_007765.1 - 419481 419500 CGGCGTGATCGATTGCTCAA 1 RbtR
NC_004041.2 - 10059 10078 TGTCTAAATCTATGGTGCCA 2 RbtR
NC_004041.2 + 38402 38421 CGGCGCCATCGATGATGCAG 2 RbtR
NC_004041.2 + 46484 46503 TTGATCTCTCGATATCTAAA 1 RbtR
NC_004041.2 - 88157 88176 TTGCGCCACCCATATTGCAG 1 RbtR
NC_004041.2 - 102470 102489 TTGCAGCATCGATAGAGGCT 1 RbtR
NC_004041.2 + 146559 146578 TGGCGCAATCGACGGTGCTC 1 RbtR
NC_004041.2 + 195277 195296 TGGCGGCCTCGATGGCGCTA 1 RbtR
NC_004041.2 + 203635 203654 CTGCGATCTCGATAGCTCCA 2 RbtR
NC_004041.2 + 216580 216599 TGGCGCCATCGAAAGCGCAT 2 RbtR
NC_004041.2 - 228920 228939 TGCCTCTATCGGTATTGCCG 1 RbtR
NC_004041.2 - 284300 284319 CTGCGCAATCGAAGCCGCAT 1 RbtR
NC_004041.2 - 305537 305556 TAGAGCCATCGTTTGCGCAA 1 RbtR
RHE_PD00304 NC_004041.2 + 320082 320101 - -205 -186 TGGCGCCATCGAAAGCGCAT 1 RbtR
RHE_PD00316 NC_004041.2 - 333002 333021 - -53 -34 CCAAACAATCGATTTTTCCA 1 RbtR
NC_007766.1 - 32889 32908 AGGCGAGATCGATTTCGTCA 1 RbtR
NC_007766.1 - 47756 47775 CTGCTCAATCGATTTCCTCA 1 RbtR
NC_007766.1 - 57358 57377 GAGAGCTATCGATTGCTGAT 1 RbtR
NC_007766.1 + 60052 60071 CGCAAAAATCGAAATTGCTA 1 RbtR
RHE_PF00061 NC_007766.1 + 61435 61454 + -76 -57 TTGCACAATGTATTGCTCAA 2 RbtR
NC_007766.1 - 136561 136580 TAGCAAACTCGGTGTGGCAA 1 RbtR
NC_007766.1 + 178063 178082 CTGCTCATCCGATTGCGCCG 1 RbtR
NC_007766.1 + 193860 193879 CAGCACCATCGGTGTTTCGA 1 RbtR
NC_007766.1 - 202517 202536 TTTCGACATCGACGTTGCCA 1 RbtR
NC_007766.1 + 272860 272879 AGGATCAATGTATTTTTCAG 1 RbtR
NC_007766.1 - 301165 301184 ATGCACTACCGGTTGCGGAT 1 RbtR
RHE_PF00288 NC_007766.1 - 320527 320546 - -57 -38 AAGCTAACTCGATGTTTTCA 1 RbtR
NC_007766.1 + 336528 336547 CTGCTCCATGGAATGCGCCA 2 RbtR
NC_007766.1 + 393867 393886 CGGCACAACCGATTTTTCCA 1 RbtR
NC_007766.1 - 418324 418343 CTGCACAATCTATATTCCCG 1 RbtR
NC_007766.1 - 442663 442682 TGGCGCAGTCGAAGGCGCCT 1 RbtR
NC_007766.1 - 451097 451116 CAGCGACGTCGATTTCGCCG 2 RbtR
NC_007766.1 + 451202 451221 ATGCGCCATCGATGAAGGCA 1 RbtR
NC_007766.1 - 503507 503526 CGGCACCAACGATGGTGTTT 1 RbtR
NC_007766.1 - 533244 533263 ACGCGCCATCGATTTAGGTG 1 RbtR
NC_007766.1 - 557888 557907 TGCATCAATCGATGCTGCCA 1 RbtR
RHE_PF00515 NC_007766.1 - 579933 579952 - -319 -300 CGGAATCATCGAGGTTGCAA 1 RbtR
NC_007766.1 + 590236 590255 CTGCATGATCGATGTCTCCA 1 RbtR
NC_007766.1 - 600767 600786 CTGCAATATCGGTTGCCCTG 1 RbtR
