https://github.com/combogenomics/rhizoreg
Tip revision: 1a4e3c93b80528b764f829ac7e50f07592e2550c authored by Marco Galardini on 14 March 2015, 10:21:57 UTC
README updated
README updated
Tip revision: 1a4e3c9
rhizoregnet_5A14_ChvI.tab
contig_46 - 974 996 CACGTTCCAGTTCTTCGCGGCAC 1 ChvI
contig_46 + 8425 8447 GACCTGCCGGTTCTTCTCAACGC 1 ChvI
contig_46 + 13505 13527 GACGGGCCTTTATTTCGCCTCTG 2 ChvI
contig_46 + 15711 15733 GACGTGCATTCGGCTCTCAACAA 1 ChvI
contig_46 - 29489 29511 GACGTGGAAAGGCTTCGCCACAT 1 ChvI
contig_46 + 59302 59324 GAGCTGCTCTATCTCCGCCGCAA 1 ChvI
contig_46 - 80341 80363 GGCCTTGCGATTTTCCGCGACAA 1 ChvI
contig_46 + 123480 123502 CACGGGCCCTTGTGTCGCCATCC 1 ChvI
contig_46 - 123564 123586 GGCGTGCCGCTTAATCGCAGCAA 1 ChvI
contig_47 + 14947 14969 GACGGGCCTCTTTGCCGCTTCCC 1 ChvI
contig_45 - 2182 2204 GACGGACAATTTCTGCGACATAA 1 ChvI
contig_45 - 16234 16256 GACGGGTCGTTGTTCCGGCATAT 1 ChvI
SM5A14_002246 contig_45 + 25611 25633 + -66 -44 GATCTGCCTTGTTTCTGCCGAAA 1 ChvI
contig_42 + 2027 2049 GCCATGCAGCCTTTTGGCCACAT 1 ChvI
contig_42 - 22515 22537 GACTTGCCCTTTCCGCGCCTCAG 1 ChvI
contig_42 - 78795 78817 GACGAGCGTGTGTTTGGCTGCCA 1 ChvI
contig_40 + 3449 3471 GGCGAGGCTTCTTTCCCCTCCAA 1 ChvI
contig_41 - 5468 5490 GACGTGCCCGATATCCACCAGAT 1 ChvI
contig_41 - 16324 16346 GTCCTGCCTTTCTTTCGGCGCAT 2 ChvI
contig_41 - 26041 26063 GTCCCGCCGTTTTATCGACAAGA 1 ChvI
contig_178 + 14524 14546 GACCTGGCTCTTCTTCGTCGGGA 1 ChvI
contig_172 + 4882 4904 GAATAGCCTTTTGTTCGCTGCAG 1 ChvI
contig_58 + 19468 19490 GACGTCTATTTTTTTCATGTCCA 1 ChvI
contig_58 - 32638 32660 GACGTCGCGGTTGATCTCCACGA 1 ChvI
contig_58 + 36209 36231 GCGGTGCCTCCTTTTTGCGACTG 1 ChvI
contig_58 + 101964 101986 GGCTTGTCTTTTGGTCCCCGGAA 1 ChvI
contig_58 + 125116 125138 TACGTGCGTGGCAATCGCCACGA 1 ChvI
contig_8 + 3764 3786 GACCTGACCTTCTTTCTGCCAAA 1 ChvI
contig_3 + 4882 4904 GAATAGCCTTTTGTTCGCTGCAG 1 ChvI
contig_4 - 2182 2204 GACGGACAATTTCTGCGACATAA 1 ChvI
contig_4 - 16234 16256 GACGGGTCGTTGTTCCGGCATAT 1 ChvI
SM5A14_000130 contig_4 + 25611 25633 + -66 -44 GATCTGCCTTGTTTCTGCCGAAA 1 ChvI
contig_4 + 35748 35770 GTCGCGCCTGTTTATCGCGCCAA 1 ChvI
contig_4 - 54348 54370 AGAATTCCCATTTCTCGCCACAA 1 ChvI
contig_4 - 60908 60930 ACCAAGCCTTTTCTGCGCCACGG 1 ChvI
contig_4 + 69473 69495 GACGAGCCTTTTTCCGGCCTCGA 2 ChvI
contig_4 - 106695 106717 GGCGTGCCCTATTCTCCCGCCAC 1 ChvI
contig_4 - 118260 118282 GACGGGTTCTTTTACCGCAACAA 2 ChvI
contig_4 - 128499 128521 GAGGTGCCTGATTTCGACGACAA 1 ChvI
contig_4 + 148650 148672 GACTTGCCTTATACTTGCCAGAA 1 ChvI
contig_4 - 166622 166644 AACAGGCATGTTTTTCTCCACTC 1 ChvI
contig_4 - 173469 173491 GTCATTCATTCCCTTCGCCAGAA 1 ChvI
contig_4 + 177362 177384 GACGTGCCCCTTGTCCCACAGAG 1 ChvI
contig_7 - 1244 1266 GGCGTGTCGGATTTTCGGCAATA 1 ChvI
contig_6 - 6829 6851 GGCGCGCCTTTTCTCCCGCACGA 1 ChvI
contig_6 + 31656 31678 GACGAGATTTTGCTTCGCAAAAC 1 ChvI
contig_6 + 52493 52515 GACGTCAGGGATTTTCGCCGCAT 1 ChvI
SM5A14_000340 contig_6 - 71579 71601 + -85 -63 CGACTGTCGTTTGTTCACCACAA 1 ChvI
contig_6 + 86793 86815 GCGACGCCTCTTTTTCGCTAAAC 1 ChvI
contig_6 - 95721 95743 GATCAGCCTGTTGTCGGCCAGAA 1 ChvI
contig_6 - 112359 112381 GACATGGCCTCATCTCGCAACAC 1 ChvI
contig_182 + 19907 19929 CTCGTTCCTTGTTGTCGGCAAAA 1 ChvI
contig_182 - 31654 31676 GACGGGCCGTCTGATCGCCCAGA 1 ChvI
contig_182 - 59931 59953 CACGTGCCGTTTGGCGGCCGCAA 2 ChvI
contig_182 + 75232 75254 GAAGTCCCTCTTTCTCGCGCCGC 1 ChvI
contig_181 + 17718 17740 ACCGAGGCTTTCTATCTCAACAA 1 ChvI
contig_186 + 9329 9351 GAAATCCCTTTGTCTTGCCGCAT 1 ChvI
contig_186 + 24296 24318 GACGCGCTGTTCGAGAGCCACAA 1 ChvI
contig_186 - 24932 24954 AACGTGGATTTTGTGAGCGACAA 1 ChvI
contig_185 + 9454 9476 GTCGAGCGTGTATTCCGACACGA 1 ChvI
contig_185 - 20581 20603 GACATGACCGACTTTCTCGACAA 1 ChvI
contig_185 - 32216 32238 GGCCGGCTCTTGTATCGCCACAA 2 ChvI
contig_185 - 52593 52615 GTCGTGCTTGCTTATCGCCAGCA 2 ChvI
contig_77 + 3993 4015 GCCGTGCCTTGTTCTCGGGAGTG 1 ChvI
contig_109 - 3707 3729 GCCATGCCTGTTCTCCACCCGAA 1 ChvI
contig_109 - 28067 28089 GTCCGGCCTTTTGTTGACCTCGA 1 ChvI
contig_109 + 31375 31397 GATGTACCTATTTTTCGCTCGAT 1 ChvI
contig_117 + 16448 16470 GAGGTCCGGATTGTTGCCCACAA 1 ChvI
contig_103 - 165 187 GACGAGATTTTGCTTCGCAAAAC 1 ChvI
SM5A14_004896 contig_101 - 7172 7194 + -32 -10 TACTTTCCGTTTGATCGCCTGAA 1 ChvI
contig_106 - 6482 6504 CACGTACCACTTTGCCGCCTCCA 1 ChvI
contig_106 - 18196 18218 GAAGTGCCTTTCGCCGGCCACCC 1 ChvI
SM5A14_005022 contig_106 + 29991 30013 + -38 -16 GAAGTTCCATATAGTCGTGACAA 1 ChvI
contig_106 - 34513 34535 GCTCAGCCTTTTTTTCGCAACGC 1 ChvI
contig_106 - 57145 57167 GACTTGCCTGATGATTGCGACCA 1 ChvI
contig_106 - 73429 73451 GCGGTGCCTTTTGCCAGCTACAT 1 ChvI
contig_104 - 165 187 GACGAGATTTTGCTTCGCAAAAC 1 ChvI
contig_105 - 1614 1636 GAAGTGCGTGCCTTCCGCAAGAA 1 ChvI
contig_213 + 3184 3206 GCCGTCGCTGTTTTCCGTCAAAC 1 ChvI
contig_213 + 4311 4333 GACGTGACGGTAGTTCACGACAT 1 ChvI
SM5A14_008597 contig_213 - 22920 22942 + -42 -20 AGCGCGCTTGTGTGTCGCCCCAA 1 ChvI
contig_213 - 28105 28127 AAAATGCCCTTTTCGCGCCCCAG 1 ChvI
contig_213 - 37203 37225 GAGCTGCCTTTTGTTCACCTGTG 1 ChvI
SM5A14_007541 contig_193 + 42771 42793 + -41 -19 CGTGCGACTATATTTCGCCTCAA 1 ChvI
contig_193 + 64245 64267 GAATTGCCTCGTCTGCGTCACAT 1 ChvI
contig_193 - 80632 80654 GATGCCGCTTTTATTCCCGACAC 1 ChvI
contig_193 - 99843 99865 GTGGTGCGTTTGTTTCGACAGGA 2 ChvI
contig_195 + 5775 5797 GACGTGCTTTTGGATGTCCGCGA 1 ChvI
contig_217 + 8598 8620 ACTATGTCTTCTTTTCGCGACGA 1 ChvI
SM5A14_008089 contig_197 + 11018 11040 + -78 -56 GCCTTGCTTTTTTCCCGCCCCCT 1 ChvI
contig_197 - 34160 34182 TGCATGGCTATTATTCGCGCCAA 1 ChvI
contig_197 + 34705 34727 GACCGGCCTCGCTTTCGCCAACA 1 ChvI
contig_215 - 4119 4141 GACATGGCTATTTCTCCGCCCAG 1 ChvI
contig_199 + 43141 43163 GACGAGGCTGCTCGTCGCCGCAA 2 ChvI
contig_198 + 32862 32884 GGCGGGCCCTTCCTCCGCCACGG 1 ChvI
contig_198 + 76337 76359 CAACGGCCTCTGTTTCTCCACGA 1 ChvI
contig_80 + 7184 7206 GCGCTGTCTTTGCGTCGACACAA 1 ChvI
contig_80 - 19006 19028 GATGCTCCTTTATTTCGCGGCGA 1 ChvI
contig_80 - 33687 33709 GCCGGCCATTTTAATCGCCGCAA 1 ChvI
contig_119 - 1521 1543 GACGTGGCGTTTTGCCGGTATAG 1 ChvI
contig_118 - 1521 1543 GACGTGGCGTTTTGCCGGTATAG 1 ChvI
SM5A14_006050 contig_142 - 3560 3582 + -225 -203 GAGCTGCCCGATTTTGGCCACAA 2 ChvI
contig_115 + 55991 56013 GGCGTGCCATATGTTCGCCCGGT 1 ChvI
contig_115 + 70297 70319 GACGCGCATTCTTTCCGCGACCG 1 ChvI
contig_115 - 80982 81004 CACGCGCTTTTCGTTCCGCACCA 1 ChvI
SM5A14_003950 contig_76 - 4069 4091 + -88 -66 GTCTTGCCCGTGATGCGCCACCA 1 ChvI
contig_76 - 17458 17480 GGCCTGCCTGTCTTTCGCCACCT 2 ChvI
SM5A14_003901 contig_75 - 5302 5324 + -48 -26 GACGCGACCCTTTTTGACCACGA 2 ChvI
contig_75 + 18875 18897 GGCCTGCGTTTTGTTTCACACGA 1 ChvI
contig_74 - 9041 9063 CACATGCCGTTTTTTCGCCCTAT 2 ChvI
contig_74 - 17639 17661 GACGTTCCTGATACTCGCGACGA 1 ChvI
contig_74 - 33271 33293 GACCTCTCCCTTTTTCGCAACCG 1 ChvI
contig_74 - 57926 57948 GAAGGACGTTTCTTTCGACACGA 1 ChvI
contig_18 + 9320 9342 GTTGAGCGATTTTTTCGCCTCGA 1 ChvI
contig_18 - 39799 39821 GACGTGTCCATGTCGCTCGACAA 1 ChvI
contig_18 - 58139 58161 GACGTTCCGATGTTTCGCGAATA 1 ChvI
contig_18 - 101105 101127 GACGAGGTTGTCATTGGCCGCAA 1 ChvI
contig_18 - 139198 139220 CGCGCCTTCTATTCGCGCGATCC 1 ChvI
contig_18 - 146403 146425 ACTGAGTTTTTGCCGCCACCCGA 1 ChvI
contig_84 + 8051 8073 AACTGCGCTCGTTTTCGCCATAA 1 ChvI
contig_87 - 6482 6504 CACGTACCACTTTGCCGCCTCCA 1 ChvI
contig_11 - 9972 9994 ACGTGCCTGTTGTTCGCGTAACC 1 ChvI
contig_13 + 5977 5999 GACGATCCCTTCTATATCCTCAA 1 ChvI
contig_13 + 29931 29953 GCCGGGCCGATTTTTCGGCGCCA 1 ChvI
contig_13 - 51287 51309 GAGCCGCCGGTTTTCCGCTACGA 1 ChvI
contig_13 - 57712 57734 GATGGGCCTTGTCGTCGCCAAGA 1 ChvI
SM5A14_000663 contig_13 - 86925 86947 + -152 -130 AATGTGCCGCTTTCTCGCCGCAA 2 ChvI
SM5A14_000674 contig_13 - 99503 99525 + -165 -143 GGCGAGCCTTCCTGCGGCCACAA 2 ChvI
contig_12 - 9041 9063 CACATGCCGTTTTTTCGCCCTAT 2 ChvI
contig_12 - 17639 17661 GACGTTCCTGATACTCGCGACGA 1 ChvI
contig_12 - 33271 33293 GACCTCTCCCTTTTTCGCAACCG 1 ChvI
contig_12 - 57926 57948 GAAGGACGTTTCTTTCGACACGA 1 ChvI
contig_12 + 89833 89855 GACGCGCATATCTACCGCAACCA 1 ChvI
contig_15 + 7706 7728 GACGTGCACGCCTTTCTCCAGCA 1 ChvI
contig_15 - 18807 18829 GACTTGCAGTTTCTGCGCGACTG 1 ChvI
contig_15 + 51380 51402 GGTGTCTCTTATTTCCGCCGCTA 1 ChvI
contig_15 + 70641 70663 GACGGATTTTTCTATCGCAACAA 1 ChvI
SM5A14_000846 contig_15 + 82574 82596 + -211 -189 CAAGGACCTTCTATTCACCACGA 1 ChvI
contig_15 + 82836 82858 GCCGTCCGTTTTCTTGGCCACGA 2 ChvI
contig_14 - 5706 5728 AACGCGGTTTTCCTGCGCCGCAA 1 ChvI
contig_14 + 21348 21370 GACGTCCCTTATCTCACCAACAG 1 ChvI
SM5A14_000956 contig_17 - 4591 4613 + -38 -16 CGGGCGCCCCTTTTTCGCCATTA 1 ChvI
SM5A14_000876 contig_16 - 3560 3582 + -225 -203 GAGCTGCCCGATTTTGGCCACAA 2 ChvI
SM5A14_000891 contig_16 + 13804 13826 + -218 -196 CACGGGCTTTATTTTCCACGAAA 1 ChvI
contig_16 - 44790 44812 ATTCACTTTTGTTCGTCAATATG 1 ChvI
contig_16 + 56169 56191 TCGAAGTGGTTCTTCTTCGACAG 1 ChvI
contig_16 + 65858 65880 AGGAGCCGCGTGTTTTCCGCCTC 1 ChvI
contig_202 + 8211 8233 TACTTTCCTTTTTTTGTCAGCAT 1 ChvI
contig_209 + 326 348 GCCGTCGCTGTTTTCCGTCAAAC 1 ChvI
contig_209 + 1453 1475 GACGTGACGGTAGTTCACGACAT 1 ChvI
SM5A14_008408 contig_208 + 2087 2109 + -278 -256 GACGTGTTCGTGTTCCGCGCCAA 1 ChvI
SM5A14_008427 contig_208 - 25166 25188 + -325 -303 GACGTGCTTTTTTATTACGGTAT 1 ChvI
contig_208 - 31393 31415 GCAGTGGCTTTTCTTCGGCAGAG 2 ChvI
contig_64 + 519 541 GCCGTATCTGTCCAGCGCCACAA 1 ChvI
contig_65 + 4925 4947 AAGTTTCCTATTTTCCGCAAGAA 1 ChvI
contig_65 - 8047 8069 GACGAGCCTTGCCTTCGGCACCG 1 ChvI
contig_126 - 23043 23065 GGCCTGCGTCTATCTCGCCACGG 1 ChvI
contig_60 + 723 745 GACCACCCGTTTCACCGTCACAA 1 ChvI
contig_60 + 25322 25344 GCCGAGCGTGTTCTGCGCCCCGA 1 ChvI
SM5A14_003378 contig_60 - 47777 47799 + -158 -136 GACATGGTTTTTTTTGGGCATTG 1 ChvI
contig_60 - 87722 87744 CACGCACCGTTTTTTCGTCAGGA 1 ChvI
contig_60 + 118425 118447 GAAGAGCCTGCTTTTGTCCCCCA 1 ChvI
contig_60 + 121663 121685 GACGGTCATGTTCGTCGCAACAA 1 ChvI
contig_60 + 132470 132492 GACGTGCGTTATCTCCGCAAAGC 1 ChvI
SM5A14_003459 contig_60 - 142572 142594 + -486 -464 GAAGGGCCTTTGTTGCCGAACTA 1 ChvI
contig_60 + 168938 168960 GACGCGCCGTTTCGGCGCATTAA 1 ChvI
SM5A14_003501 contig_60 - 183976 183998 + -486 -464 GCGGGGCTTTTTTATCGCCATAG 2 ChvI
contig_60 + 185527 185549 CAAGTGCTTTTCGTTCGCCAACA 1 ChvI
contig_60 - 210977 210999 ATCGCGCCGGTATTTCGCCAGAA 2 ChvI
SM5A14_003552 contig_60 + 237162 237184 + -172 -150 GACGTGCTTTTTTTAGCAGGCAA 2 ChvI
contig_63 - 5959 5981 GACATGCCTTCCCTGCTCCATAC 1 ChvI
contig_63 + 8336 8358 GCCTTGCCTTTTGTTCGCGGGAA 2 ChvI
contig_63 - 18150 18172 GACGAGCCGTTTGGTCGTAAATA 1 ChvI
contig_85 + 8352 8374 CAAGCCCCTGTTGCTCGCCACAC 1 ChvI
contig_91 + 275 297 GACGTGTCTGCATCTCGACATCA 1 ChvI
contig_133 + 15086 15108 GACGAGGTTCTTGCGCGGCACAA 1 ChvI
SM5A14_005584 contig_133 + 26190 26212 + -340 -318 AACCCGCCCTTTTGTTGCCGCCA 1 ChvI
contig_90 - 3661 3683 GACCTGTCGGTGGTCCGCTACAA 1 ChvI
contig_90 + 11525 11547 GACGCTCCGCGTTTTCGCCACCG 1 ChvI
contig_131 + 3735 3757 CATGGGCCTTTTCTTCGGGACCA 2 ChvI
SM5A14_004425 contig_92 + 16053 16075 + -31 -9 GACGTGGCTTTTGATCGGAGGGA 1 ChvI
contig_92 + 17779 17801 GTCGTGCTTGCTTATCGCCAGCA 2 ChvI
contig_92 + 38156 38178 GGCCGGCTCTTGTATCGCCACAA 2 ChvI
contig_92 + 49791 49813 GACATGACCGACTTTCTCGACAA 1 ChvI
contig_97 + 27939 27961 GACGTGCCCGGCTATTGCCAGTA 1 ChvI
contig_97 - 37212 37234 GGCCTGCCGTTCCTGCGCAACAA 1 ChvI
contig_97 + 52032 52054 GAGGTCCGTGTTGGTCGCCACCG 1 ChvI
contig_97 - 65414 65436 GATGGGCCTGTTGTTCGTCGGAT 1 ChvI
contig_97 + 113249 113271 GAAGTGCCCGTTTTGATCGACAA 2 ChvI
contig_97 - 122327 122349 GACGCGCGCTGTTTTCTCAACAT 1 ChvI
contig_97 - 133484 133506 GACGTGGATTTTTTCCGCGCCGA 2 ChvI
SM5A14_004710 contig_97 - 189754 189776 + -42 -20 GCCGCGTATGTTATTCTGCACAA 1 ChvI
contig_97 - 201242 201264 GGCCTGGCTCTTTCTCGCGCCAA 1 ChvI
contig_97 + 221360 221382 GACGGCCCTTTGTGCCGCCTGCA 1 ChvI
contig_97 - 233960 233982 AACGAGCCTGTTTTCCGCTGCAA 1 ChvI
contig_97 + 267932 267954 AACGCGCCGTCATTTCGGCACAG 1 ChvI
contig_97 - 273212 273234 GGCGTGGCGGTTTTTTGCCAAAA 1 ChvI
contig_139 - 22585 22607 GACGGCCCTGCTCATCGCCACTC 1 ChvI
contig_139 + 51557 51579 GAAGTCCCGTCTGCTCGCCACCG 1 ChvI
contig_139 - 116538 116560 TCGATTCCTTTGTTTTGCCGCAA 1 ChvI
SM5A14_005902 contig_139 - 144447 144469 + -73 -51 GGCACGCGTATTTTCTGCCACGA 1 ChvI
contig_138 - 24955 24977 GCCGTCGCTTGTAGTCGCCGGAA 1 ChvI
contig_138 - 35566 35588 CGCGTGATCGTTTTCCGCCACAG 1 ChvI
contig_136 + 507 529 GACCGGCCCTTTCGTCACGACCA 1 ChvI
contig_135 - 6034 6056 GTCGGGGGTGTTCTTCGCCGGAA 1 ChvI
contig_135 - 19821 19843 GTCGGGAATTTTGATCGGCCCAA 1 ChvI
contig_135 + 43625 43647 GACGCGCCATTCGATATCCCCAA 1 ChvI
contig_38 + 4141 4163 GCGCTGTCTTTGCGTCGACACAA 1 ChvI
contig_38 - 15963 15985 GATGCTCCTTTATTTCGCGGCGA 1 ChvI
contig_38 - 30644 30666 GCCGGCCATTTTAATCGCCGCAA 1 ChvI
contig_36 - 5905 5927 GGCCTGCCTTTATTTCACGACCG 1 ChvI
contig_36 + 7985 8007 GATGTGCCCTACGGGCGCGACAA 1 ChvI
contig_35 + 4073 4095 GACGTGCGCTATCTCCGCAACGC 1 ChvI
contig_35 - 14932 14954 GACGCCGCTCTCCTTCGGCACAG 1 ChvI
contig_35 - 24888 24910 GCCATTCCTTTCTCACGCTACAG 1 ChvI
contig_34 + 10554 10576 GACGATGCCTCCTTCTGCCACAA 1 ChvI
SM5A14_001815 contig_34 + 40027 40049 + -131 -109 GCCCTGCCCCTTTTTAGCCGCGC 1 ChvI
contig_33 + 8920 8942 GACGCGCTTTTCGACCGCAACAA 2 ChvI
contig_32 + 5460 5482 GAAGCGCGTTATGTCCGTGACAA 1 ChvI
contig_31 + 6751 6773 AGCGTGCCTTGGTTTCTCCGTAT 1 ChvI
contig_71 - 6829 6851 GGCGCGCCTTTTCTCCCGCACGA 1 ChvI
contig_144 + 390 412 GCGGTGCCTTTTTGCGTGCACAG 1 ChvI
contig_144 + 10387 10409 GACGAGCCTCTGTTCCGCAAAGG 1 ChvI
SM5A14_006206 contig_144 + 16122 16144 + -63 -41 GTCGTGTCACCAATTCCCCACAA 1 ChvI
contig_144 + 22452 22474 GACGAGCCTTTTTCCGGCCTCGA 1 ChvI
contig_144 - 59674 59696 GGCGTGCCCTATTCTCCCGCCAC 1 ChvI
contig_144 - 71239 71261 GACGGGTTCTTTTACCGCAACAA 2 ChvI
contig_144 - 81478 81500 GAGGTGCCTGATTTCGACGACAA 1 ChvI
contig_144 + 101629 101651 GACTTGCCTTATACTTGCCAGAA 1 ChvI
contig_144 - 119601 119623 AACAGGCATGTTTTTCTCCACTC 1 ChvI
contig_144 - 126448 126470 GTCATTCATTCCCTTCGCCAGAA 1 ChvI
contig_145 - 767 789 GGCGTGCGTCTCCAGCGCTACAA 1 ChvI
contig_86 + 25989 26011 GACGTGCTGGTCGTTCGCCACTC 2 ChvI
contig_86 + 27782 27804 GACGAGCCTTGGGTTCTCCACAA 1 ChvI
contig_143 - 6329 6351 CACGGTCCATTTCAGCGCCACGA 1 ChvI
contig_143 + 35283 35305 GACGTGCCGCTCATTCGCGTGCA 1 ChvI
contig_143 - 49214 49236 GACGGGCCTCTTCATGGCGGCAA 2 ChvI
SM5A14_006130 contig_143 + 59154 59176 + -39 -17 TATGACATTTTCTGTCGCCACAA 1 ChvI
SM5A14_006139 contig_143 - 71003 71025 + -381 -359 GCCGGGCTTTTTTGTTGCCCTAT 1 ChvI
contig_143 - 110182 110204 GCCCGGCCCTTCTTTCGGTACAT 1 ChvI
contig_143 + 116656 116678 GAGGGGCGTTCTTTCCCCTTCAA 1 ChvI
contig_140 + 6416 6438 GACTTGTTTTTCGTTGGCCACTT 1 ChvI
SM5A14_005999 contig_141 + 12425 12447 + -59 -37 GACATGCATTCGGTTCGACCGAA 1 ChvI
contig_148 + 2330 2352 TTCCTCCCTGTTTCCCGCCACGA 1 ChvI
contig_148 + 57768 57790 GACGGGACGATTTCTCGGCACTG 1 ChvI
contig_148 + 70431 70453 GACGTTCCGATGTTTCGCGAATA 1 ChvI
contig_148 - 108258 108280 CACGTGGGTCTTATTCTCCTCGA 1 ChvI
contig_20 + 3377 3399 CCCGGGCCTTTACTTCGACGCAG 1 ChvI
contig_20 - 4376 4398 GCCGTGCCTTTATCTCGTGGCAA 1 ChvI
contig_22 - 133 155 GTAGGGGCTTTTTTTGGCGAGAA 2 ChvI
SM5A14_001257 contig_22 - 16164 16186 + -46 -24 GCCGGGGCTTTTTCTTGCTACAG 2 ChvI
contig_22 - 30078 30100 GAGGAGACGTTCTTCAGCCGCAA 1 ChvI
contig_22 + 64656 64678 GACGGGCCTCTTTCTCGGCAATG 2 ChvI
contig_22 - 80891 80913 GACGTTCCCTTCGTGGGCCAGGA 1 ChvI
contig_22 - 112893 112915 GGCGTGCCGGGTTATCACCAGAA 2 ChvI
contig_22 - 122274 122296 GTCTTGGCCTATTTTCTCGGCAA 1 ChvI
contig_23 - 12299 12321 GACGTGCCAGTATTTGGCAAAAG 2 ChvI
contig_23 - 44404 44426 GACCGGCCGTCTTGTCGAGATAA 1 ChvI
contig_23 - 49002 49024 GTCGAGCCTCTTTCCCGCCAAGA 1 ChvI
contig_23 - 78310 78332 GCCTTGCGTTTCTTCCACCAGAT 1 ChvI
contig_25 + 19238 19260 GAAGTCCCTGTTCTCTGCAACAT 1 ChvI
contig_26 + 26900 26922 GAGCTGCTTGTTTTCCGACATCA 1 ChvI
contig_27 - 18144 18166 GGAATCCGATTTCATCGCCACAA 1 ChvI
contig_154 - 3253 3275 GACCAGTCGTTTGTCCGCAACAT 1 ChvI
contig_151 - 3400 3422 GACGAGGCTTTGGCTCGCACGAA 1 ChvI
SM5A14_006569 contig_151 - 18322 18344 + -172 -150 GACGTGCTTTTTTTAGCAGGCAA 1 ChvI
contig_153 - 24 46 TTGGTGCCCTTTTTCAGCAACAG 1 ChvI
contig_158 - 1879 1901 GACGGGAGTTTATTTCGGACCCA 1 ChvI
contig_158 - 8808 8830 GCCGTCCATCACTCTCGCCAGAA 1 ChvI
SM5A14_006719 contig_158 - 22682 22704 + -379 -357 AACGCACTTTGATTTCGCCATCA 1 ChvI
contig_158 - 34309 34331 GGCCTACCATTTTTTTGCAAGAA 1 ChvI
contig_55 - 13916 13938 GACTTGCGTCTTTTCTGTCGCAG 1 ChvI
contig_55 - 14223 14245 GACTTGACGTTGTGGCGCCCGAA 1 ChvI
contig_55 + 30898 30920 GCCATTGCCTTTTTTCTCCATGA 1 ChvI
contig_54 - 4780 4802 GACGTGCTGATGTATCTCGGCAA 1 ChvI
contig_54 + 77473 77495 GCCGTCCTGTTCATCAGCCACAA 1 ChvI
contig_56 - 1723 1745 GGCGGGCGTTTCATTCGACCCCA 1 ChvI
SM5A14_003093 contig_56 - 36269 36291 + -74 -52 GCCGTGCGTTTTTTTGTCTCCGG 1 ChvI
contig_56 - 39330 39352 GAGCTGTCTTTGTTCCACCACAA 2 ChvI
contig_56 + 54347 54369 TAAGTCCCTTAAGTTCGCCAAAG 1 ChvI
contig_51 + 1138 1160 GACGTGCGGCTTATTGCGCTCAA 1 ChvI
contig_50 + 3780 3802 GCTGTCGCGCGTTTTCGCAACAA 1 ChvI
SM5A14_002462 contig_50 + 14416 14438 + -207 -185 GGCGTTCATTTTTTCCGGAACAG 1 ChvI
contig_50 - 41559 41581 GACACGCCGGTATTCCGCCTCAC 1 ChvI
contig_53 - 6329 6351 CACGGTCCATTTCAGCGCCACGA 1 ChvI
contig_53 + 35283 35305 GACGTGCCGCTCATTCGCGTGCA 1 ChvI
contig_53 - 49214 49236 GACGGGCCTCTTCATGGCGGCAA 2 ChvI
SM5A14_002572 contig_53 + 59154 59176 + -39 -17 TATGACATTTTCTGTCGCCACAA 1 ChvI
SM5A14_002581 contig_53 - 71003 71025 + -381 -359 GCCGGGCTTTTTTGTTGCCCTAT 1 ChvI
contig_53 - 110182 110204 GCCCGGCCCTTCTTTCGGTACAT 1 ChvI
contig_53 + 116656 116678 GAGGGGCGTTCTTTCCCCTTCAA 1 ChvI
contig_53 - 147279 147301 GTAGGGGCTTTTTTTGGCGAGAA 2 ChvI
SM5A14_002651 contig_53 - 163310 163332 + -46 -24 GCCGGGGCTTTTTCTTGCTACAG 2 ChvI
contig_53 - 177224 177246 GAGGAGACGTTCTTCAGCCGCAA 1 ChvI
contig_53 + 211802 211824 GACGGGCCTCTTTCTCGGCAATG 2 ChvI
contig_53 - 228037 228059 GACGTTCCCTTCGTGGGCCAGGA 1 ChvI
contig_53 - 260039 260061 GGCGTGCCGGGTTATCACCAGAA 2 ChvI
contig_53 - 269420 269442 GTCTTGGCCTATTTTCTCGGCAA 1 ChvI
contig_53 - 301228 301250 GACGTGTTTTTCGTTCGCCAGGC 1 ChvI
contig_53 - 352024 352046 GTCATTCATTCCCTTCGCCAGAA 1 ChvI
contig_53 - 356450 356472 CACGTGACTTGTTTTTCCATGAA 1 ChvI
contig_53 + 376038 376060 GACCTGGCTTGTAGAGGCCACGA 1 ChvI
SM5A14_002902 contig_53 + 423959 423981 + -276 -254 CACGTCCATGTTCTTGGCCAAAA 1 ChvI
SM5A14_008478 contig_210 + 5818 5840 + -83 -61 GGCCGCCCTCGTCTTCGCCACAA 2 ChvI
contig_210 - 9552 9574 GACGAGGGCTTCGTACGCAACAA 1 ChvI
contig_210 - 30953 30975 AACGGGCCCTGAACTCGCCAGAA 1 ChvI
contig_210 - 43330 43352 GCCGTTCATTTTTTTACGAAGAA 1 ChvI
contig_210 + 49432 49454 GAGGTGTCGGTCATTTGCCCCAA 1 ChvI
contig_210 - 58596 58618 GGCTCGCCTATGTCTCACAACAA 1 ChvI
contig_210 + 65833 65855 GCAATGCCGCATGTTCGCTACAA 1 ChvI
SM5A14_008529 contig_210 + 67866 67888 + -132 -110 GCCGTCGCCTTTTTTGGTTACAC 1 ChvI
contig_210 - 75148 75170 AACCTGCTTTGGTTTTGCCGGAA 1 ChvI
SM5A14_008554 contig_210 + 88224 88246 + -266 -244 GCCGTACTTGTCCAGCGCCACAA 1 ChvI
contig_211 - 4244 4266 AATGTCCGTTGTCGTCGCCAAAA 1 ChvI
contig_211 - 14723 14745 GACGTGCCGCGTCATCTCACCAA 1 ChvI
contig_194 - 38094 38116 GACGAGATTTTGCTTCGCAAAAC 1 ChvI
SM5A14_006783 contig_160 - 4272 4294 + -91 -69 GGCATGGCTTTTATGCGCCAACA 1 ChvI
contig_161 - 17606 17628 GTCGTCCAGGTATTGCGCCACAT 1 ChvI
contig_161 + 41917 41939 GACGTCCCTGTAAATCGAGACCA 1 ChvI
contig_161 - 66788 66810 TGCGTCCTTTCTTATCGCGACGA 1 ChvI
contig_161 - 69588 69610 CAGGTGCCTTCCGGTCCCCAGAA 1 ChvI
contig_162 + 3977 3999 GACGTCTCGATTTTTGGCCGGAT 1 ChvI
contig_196 + 27939 27961 GACGTGCCCGGCTATTGCCAGTA 1 ChvI
contig_196 - 37212 37234 GGCCTGCCGTTCCTGCGCAACAA 1 ChvI
contig_196 + 52032 52054 GAGGTCCGTGTTGGTCGCCACCG 1 ChvI
contig_196 - 65414 65436 GATGGGCCTGTTGTTCGTCGGAT 1 ChvI
contig_196 + 113249 113271 GAAGTGCCCGTTTTGATCGACAA 2 ChvI
contig_196 - 122327 122349 GACGCGCGCTGTTTTCTCAACAT 1 ChvI
contig_196 - 133484 133506 GACGTGGATTTTTTCCGCGCCGA 2 ChvI
SM5A14_007888 contig_196 - 189754 189776 + -42 -20 GCCGCGTATGTTATTCTGCACAA 1 ChvI
contig_196 - 201242 201264 GGCCTGGCTCTTTCTCGCGCCAA 1 ChvI
contig_196 + 221360 221382 GACGGCCCTTTGTGCCGCCTGCA 1 ChvI
contig_196 - 233960 233982 AACGAGCCTGTTTTCCGCTGCAA 1 ChvI
contig_196 + 267932 267954 AACGCGCCGTCATTTCGGCACAG 1 ChvI
contig_196 - 273212 273234 GGCGTGGCGGTTTTTTGCCAAAA 1 ChvI
contig_196 + 323315 323337 GACCTGCAGTTTTTCCGCACCTG 1 ChvI
