https://github.com/connor-lab/ncov2019-artic-nf
Tip revision: 8af5152cf7107c3a369b996f5bad3473d329050c authored by Matt Bull on 08 April 2021, 15:56:30 UTC
Fix params.gff undefined and remove CLIMB upload (#99)
Fix params.gff undefined and remove CLIMB upload (#99)
Tip revision: 8af5152
gls.config
// Google Life Sciences specific config
executor {
workDir = 'gs://project-bucket/scratch' // <- replace with your own bucket!
if ( params.medaka || params.nanopolish ){
process.container = 'location of artic-ncov2019-medaka container'
}
if ( params.illumina ){
process.container = 'location of artic-ncov2019-illumina'
}
}
google {
region = 'us-central1' // <- The Google Cloud region or zone. Separate multiple ones with comma
project = 'project-id' // <- replace with the Google project ID of your project
lifeSciences.bootDiskSize = 150.GB
lifeSciences.preemptible = true
}
process {
process.errorStrategy = { task.exitStatus==14 ? 'retry' : 'terminate' }
process.maxRetries = 5
}