4b70769bfd8edc1a783f323350f07d02 *DESCRIPTION
9784bbd31ff5e76e9a8013fb1718d14d *NAMESPACE
57679970d38c17ac9c95478b9313aed0 *R/attractorsToLaTeX.R
0e037f01fa88a832cb43d3a9d5e9f5dd *R/binarizeTimeSeries.R
7b9f3b1500dd64c40cd4e9e2baa369ad *R/chooseNetwork.R
7c81eb3530ee3fede7742d9729de77c1 *R/edgeDetector.R
c7fb28f26b946db5f54730be6d492516 *R/fixGenes.R
b96b8b67effb0c2d55a29cc6f19323bd *R/generateRandomNKNetwork.R
9597332899ac07b3145917fafc789d15 *R/generateRandomStartStates.R
2c872695c4fa33c90c6de2431f19e689 *R/generateState.R
5650d6d8b6da147a254e9681a291a90b *R/generateTimeSeries.R
4db8f585d2e3477db95a8db2720a2e4c *R/getAttractorSequence.R
140740c1ba1d08eea3e27e9da3637f48 *R/getAttractors.R
08764b48eccb7812f9c333c122d1e689 *R/getBasinOfAttraction.R
cc663c2b39dc50cd45bbb83d7cd36d44 *R/getPathToAttractor.R
9637fc5badfec905a1d865d5e65d3839 *R/getStateSummary.R
a45f67785e1846f8482c9ff10debd95c *R/getTransitionProbabilities.R
d31c9950c1a42c23eb5585c23e98bb25 *R/getTransitionTable.R
553c3f023784f01d73c69c469d14ea53 *R/helpers.R
8e0fdeac893b8bfc8837c9d94e9ed1f9 *R/loadBioTapestry.R
f1e4da50ef5dd5ea083b8fcd060b3f77 *R/loadNetwork.R
aa19fa3aaa70362a5d5d18bb114c245c *R/loadSBML.R
817f7c8476aa6b32443be62885e3c72d *R/markovSimulation.R
d3dc1ab8d227e4775adfaee9973732e9 *R/parseBooleanFunction.R
75a4ff7284740122216a79cd7f9508e1 *R/perturbNetwork.R
6e8d3d79095844cf1fb6cb7c75750cfe *R/perturbTrajectories.R
b3c6b0765a241bb1d4e4a150f47d3d8b *R/plotAttractors.R
20fd67145509cae5e9701fcfa93e210c *R/plotNetworkWiring.R
9f64811ec997a7aa2fc262725ae6f7e5 *R/plotPBNTransitions.R
6404119c6511b8c5741721d6cd237276 *R/plotSequence.R
3e92ac93c5ce1934d542b3eb7985aa44 *R/plotStateGraph.R
1d3e5b86636a5b54035d7062285e34e4 *R/print.AttractorInfo.R
bd5b5182c9a4321e0051be7f40bcbf6f *R/print.BooleanNetwork.R
09ac08c8cb2ef098c96a86de93e5ad7c *R/print.BooleanStateInfo.R
b4ce1c3d7c29f9b9d92a5428ace77b0a *R/print.MarkovSimulation.R
55d7e998f889cf528bef3d68edb38562 *R/print.ProbabilisticBooleanNetwork.R
2a6921108f7704c4949bcd96b82a2cb0 *R/print.SymbolicBooleanNetwork.R
1138169d9ef31f04670bbc2544524e4c *R/print.SymbolicSimulation.R
0adfd6c034e0bf75c16d351c4f2e52f6 *R/print.TransitionTable.R
78216cfe9045ded3a90b43edb6e0d21f *R/reconstructNetwork.R
00623749adde58c327566c72a67d4027 *R/saveNetwork.R
8db261cf9b75f737bc6ca7f49c67dbd0 *R/scanStatistic.R
a9cfa06573f8eeb0aefa2329c59689aa *R/sequenceToLaTeX.R
5877e9963cac94f7dc2b245079826450 *R/simplifyNetwork.R
c8a4ab49f15e1e8888d4bd132e1d9271 *R/simulateSymbolicModel.R
595c68d880e16c31046313f648cc34c6 *R/stateTransition.R
ea0fbe49b283f4f0c073de77ab78fbaf *R/symbolicToTruthTable.R
42daa52bc14fc6918004e35203e07907 *R/testNetworkProperties.R
568159a3609b108c45ba2c39728fa6ce *R/toPajek.R
47bc51ada1eefa53c11e0171a589bc8b *R/toSBML.R
dab752c2c82ef4e5e93224ad6934208c *R/truthTableToSymbolic.R
811f12cc71a25cbf23ade7eb93bb2162 *R/zeta.R
26698e02ed7503124720c32ef70da6a0 *build/vignette.rds
6323b9a68ede50d320ceffa342711988 *data/cellcycle.rda
2162a3dfd9f29f06223413307dd177c8 *data/examplePBN.rda
d58578f1cc7da58378f1617a6d8bb021 *data/igf.rda
8919de127f7ee2391900468a36c5dcd4 *data/yeastTimeSeries.rda
c2ba2ffc7f8eecb769b2d151a0a567c3 *inst/CITATION
49fe6c2b2f5db31583cdedb90833d8ce *inst/NEWS.Rd
fb4bff4a00b9ef7f7933814535609bbe *inst/doc/BoolNet_package_vignette.R
d67c2471fb9f1075461b6d2fc79aa2b1 *inst/doc/BoolNet_package_vignette.Snw
195bc9de963d2ec89d00ba1d8aa9ad1c *inst/doc/BoolNet_package_vignette.pdf
fcb0ddc4a26eb5062f05b55032e5b151 *inst/doc/cellcycle.txt
27bccf40991bbe762bc274cbd7874f40 *inst/doc/example.btp
c18e73532d5371152f71d625415e81b2 *man/attractorsToLaTeX.Rd
3f38a60cff23b336642ed070e649f36a *man/binarizeTimeSeries.Rd
66463757d6cb6fab74e9a955a6164267 *man/cellcycle.Rd
418fea2c14f3bf578fc2d51de83baff8 *man/chooseNetwork.Rd
3b280a61e2e25a9432dfd0dab1d6d18e *man/examplePBN.Rd
ee848afa1c4ca77773b75def1fbb5597 *man/fixGenes.Rd
a7075800d913cf6125cd658cee8fba4b *man/generateRandomNKNetwork.Rd
6233be4a99e3679c3387eacc6021c9b7 *man/generateState.Rd
0ef226f76aa0a8be748c788682b9b09d *man/generateTimeSeries.Rd
55cc8cc9f64855597ea40877064cfd57 *man/generationFunctions.Rd
b92864ab58b032d49bbaf7e4b403040c *man/getAttractorSequence.Rd
ce20637e139cf63628d21531d479c5d7 *man/getAttractors.Rd
66c799a2190e76139de901c98178c102 *man/getBasinOfAttraction.Rd
f5b9134d6cb133543a1d3649b8d5915c *man/getPathToAttractor.Rd
227db2f59e2c70e412acc8d3bc76a66d *man/getStateSummary.Rd
394097ff1ec32744befa8ca978f25de0 *man/getTransitionProbabilities.Rd
bba61ea4a4e91e29298e56a5d8907d10 *man/getTransitionTable.Rd
55e1e5c8c85820e3d07687552d44944a *man/igf.Rd
587e3d9f92b152e985488e938940ac71 *man/loadBioTapestry.Rd
4977fd501e88e2cee72643a701912b63 *man/loadNetwork.Rd
652f08ea8e4fb8f8c633f7fa9d900f3c *man/loadSBML.Rd
355384e357d123772fa178b50957e972 *man/markovSimulation.Rd
c5aa37e4f7fccd0dcc45ae63ca2e43c1 *man/perturbNetwork.Rd
76979ad66ad56be54d1b7be3b8a4aeb8 *man/perturbTrajectories.Rd
b87db947fd701f08a278ed96f2368ee5 *man/plotAttractors.Rd
47b0d009ef25d726d4595aaae5c7e125 *man/plotNetworkWiring.Rd
f16447c951cf61d08cd476c8b83f82f0 *man/plotPBNTransitions.Rd
8d67815eda6244e4f9baaabda715b012 *man/plotSequence.Rd
be7e29a2f7ee50329f93c4d9e2b9d0c9 *man/plotStateGraph.Rd
3ec938a75a9dcb49203ce32e740ecd2a *man/print.AttractorInfo.Rd
2735292192997eca8e0a624a0f136d2f *man/print.BooleanNetwork.Rd
5d61892283589cdb01ef269a488e3d66 *man/print.MarkovSimulation.Rd
60153469a83673fe623dc62918ac84fa *man/print.ProbabilisticBooleanNetwork.Rd
7de039167ec5b192bd12d28bc49d4c72 *man/print.SymbolicSimulation.Rd
e0d5cb6760755507a21c167f9426c592 *man/print.TransitionTable.Rd
e5b5ee63c75be0c158d32677bf07b36b *man/reconstructNetwork.Rd
cb473a0b145eaeac4d8f5c07a68b3ad5 *man/saveNetwork.Rd
a8503e56eb5ff34e2b334e88742ba057 *man/sequenceToLaTeX.Rd
bb7a087492001b4fabe64d2d8506caa1 *man/simplifyNetwork.Rd
b50dfe205d07c1435afefe8ec1d53115 *man/simulateSymbolicModel.Rd
6e816d8d86f0b4b06bbdf0ddc9b5f0bc *man/stateTransition.Rd
c5b8ac0b669c25b9f6b7946b233d7f67 *man/symbolicToTruthTable.Rd
dff636a8e481d63b3b52604efa9f0ebb *man/testNetworkProperties.Rd
8e8514658481c4feb3ff6aacf0aff459 *man/toPajek.Rd
b304afa7f76464603efbf169a2b46336 *man/toSBML.Rd
6a6f4f827e1512236927e239ad2e0719 *man/truthTableToSymbolic.Rd
c2fac985948f6c23a281a70597f2220e *man/yeastTimeSeries.Rd
da975f995fc5f2ef57170b3d3ba53178 *src/Makevars.win
56a684219ad834529e4c4c6e9deb9ef2 *src/attractor_info.c
8b25f0694d6279bba2e28c947e304524 *src/attractor_info.h
4f5885dbe22b3adae3da6a066bb3cb06 *src/attractor_search_interface.c
8e4fdfd767d86b61f15c5c245e8dba77 *src/boolean_network.h
2ca57d54ac06972d96cd77f2be31d821 *src/common.c
8b9a314ecf353576c5d9199a8fc9d97d *src/common.h
b4b6b972bdfa49be58d163a0ff9e9558 *src/init.c
9ab5e72eecfbf58d09815285c86b1f32 *src/picosat.c
2c29607ee624151f84ac09f55535010e *src/picosat.h
a869a6a74b9c0a1c4c796003c1251d60 *src/probabilistic_boolean_network.c
e99e9148907849c0b79f373a2714639c *src/random.h
a18cb9116413559c5438e6f25e8f7149 *src/reconstruct_network.c
b5e6e8d104bc2f031af765d728de03b7 *src/sat_search.c
0d6515ab8ff7605f16ca10eb5c6fc9e4 *src/sat_search.h
351d201ca2f926bdd1b5f4694de19902 *src/statespace_search.c
c085761b2f853545febe7170a3715eb2 *src/statespace_search.h
4d4e389c0ff626a5e0db88416991e94e *src/symbolic_network.c
dbbf4848847aefb8b756d749519bdf1d *src/symbolic_network.h
44a2f71d374da28a5c80e674f62bc976 *src/symbolic_simulator.c
460b4e88a7af5ba2c60231ca9f3644c8 *src/uthash.h
d67c2471fb9f1075461b6d2fc79aa2b1 *vignettes/BoolNet_package_vignette.Snw
327d97a2c7e1bebc61bd3e20a2082b5e *vignettes/BoolNet_package_vignette.Snw.tex
45d3f76bd49d22f8d6e0ad5cc2a14c62 *vignettes/BoolNet_package_vignette.bib
8a78420b2b9d23b39e6ae9fb79d41ebf *vignettes/attractor1.pdf
6bb506206da5fb61f62cb56c5e935120 *vignettes/attractor2.pdf
af93a2fda5c13d9e21b95ba71ce30a9e *vignettes/attractor3.pdf
80ef18e9875b6901dd4f1c5dd83842fc *vignettes/attractor_robustness.pdf
59d4130c0da6d1dea71b37d6431374b2 *vignettes/basinsize.pdf
cbc02d945670e5381418720262b10955 *vignettes/biotap_initval.png
530409792bed5d5a53140e85554b9d61 *vignettes/biotap_logic.png
d4a2fcf1d0a873afde1c021019649014 *vignettes/biotap_model.png
e02e5fea28346a3d8162b4feaa6ffb05 *vignettes/biotap_sim_properties.png
1d058f049a3c1d94592bec3e06b77480 *vignettes/indegree.pdf
52b1e5f5a9b41d5670fe7a23560495c4 *vignettes/indegree_kl.pdf
d6aa77a2d43960ebb98c288990d3fe41 *vignettes/pajek.png
1f6831762c8913a7e10160a83e6c7959 *vignettes/pbntransitions.pdf
dd4f4251f46fbe03a206a3b7ea99f281 *vignettes/piecewisestategraph.pdf
7f3d60160632e2f09add26bb1bb035ef *vignettes/sequence.pdf
01ecf83ac8b196de6d75a20716f405d9 *vignettes/sequence_igf.pdf
4ce1d630304d3f6cbc96f7844e0a5f15 *vignettes/stategraph1.pdf
6674bb5b871dc80697a69ccfd24623e4 *vignettes/stategraph2.pdf
a80586e3af1e3220e721e12569e0bdb9 *vignettes/transition_robustness.pdf
0c82f879bd44520423c98c743f5465c9 *vignettes/wiring1.pdf
ae9fd9d09c1072c33c57d5e9071ae27f *vignettes/wiring2.pdf
5f6087613151132a3ccb468023836627 *vignettes/wiring_biotap.pdf