https://github.com/cran/Epi
Tip revision: 2fdf3dc5a9fc3a20c1958288fd48fae421770db8 authored by Bendix Carstensen on 31 March 2024, 09:00:02 UTC
version 2.48
version 2.48
Tip revision: 2fdf3dc
NAMESPACE
useDynLib(Epi, .registration=TRUE)
export(
apc.frame,
apc.fit,
apc.plot,
apc.lines,
plot.apc,
lines.apc,
pc.points,
pc.lines,
pc.matpoints,
pc.matlines,
pc.matshade,
cp.points,
cp.lines,
cp.matpoints,
cp.matlines,
cp.matshade,
cal.yr,
as.Date.cal.yr,
ccwc,
ci.pd,
ci.lin,
ci.exp,
ci.cum,
ci.surv,
ci.pred,
ci.ratio,
ci.mat,
ci.Crisk,
matshade,
lls,
clear,
contr.orth,
contr.2nd,
contr.cum,
contr.diff,
detrend,
decurve,
dur,
erl, surv1, surv2, erl1, yll,
effx,
effx.match,
float,
print.floated,
gen.exp,
mat2pol,
Icens,
print.Icens,
summary.Icens,
plotevent,
fit.add,
fit.mult,
ftrend,
fgrep,
ngrep,
lgrep,
plotCIF,
stackedCIF,
show.apc.LCa,
apc.LCa,
LCa.fit,
print.LCa,
summary.LCa,
predict.LCa,
plot.LCa,
Lexis.diagram,
Lexis.lines,
Life.lines,
Lexis,
unLexis,
merge.Lexis,
plot.Lexis,
points.Lexis,
lines.Lexis,
PY.ann.Lexis,
subset.Lexis,
"[.Lexis",
cbind.Lexis,
rbind.Lexis,
order.Lexis,
orderLexis,
sortLexis,
print.Lexis,
summary.Lexis,
print.summary.Lexis,
splitLexis,
transform.Lexis,
levels.Lexis,
nid.Lexis,
bootLexis,
Relevel.Lexis,
factorize.Lexis,
cutLexis,
mcutLexis,
rcutLexis,
countLexis,
stack.Lexis,
tmat.Lexis,
boxes.Lexis,
boxes.matrix,
boxes.MS,
msdata.Lexis,
etm.Lexis,
crr.Lexis,
glm.Lexis,
gam.Lexis,
coxph.Lexis,
AaJ.Lexis,
simLexis,
addCov.Lexis,
addDrug.Lexis,
coarse.Lexis,
subset.stacked.Lexis,
transform.stacked.Lexis,
plot.pState,
lines.pState,
Lexis2msm,
entry,
exit,
status,
timeBand,
timeScales,
timeSince,
tsNA20,
breaks,
absorbing,
transient,
preceding,
before,
succeeding,
after,
tbox,
dbox,
fillarr,
boxarr,
boxes,
factorize,
rm.tr,
PY.ann,
N2Y,
tmat,
nState,
pState,
msdata,
mh,
print.mh,
ncut,
nice,
NArray,
ZArray,
Ns,
Termplot,
pctab,
plotEst,
pointsEst,
projection.ip,
in.span,
inSpan,
id.span,
idSpan,
thinCol,
linesEst,
rateplot,
Aplot,
Pplot,
Cplot,
nid,
Relevel,
Relevel.factor,
ROC,
twoby2,
Wald,
stat.table,
clogistic,
poisreg,
harm)
# Import generic methods
importFrom( utils, stack )
importFrom( splines, ns, bs )
importFrom( plyr, rbind.fill )
# importFrom( purrr, "%>%" )
importFrom( magrittr, "%>%" )
importFrom( dplyr, summarize, group_by, arrange, left_join, inner_join,
select, rename, mutate, ungroup, filter, near)
importFrom( cmprsk, crr)
importFrom( etm, etm )
# importFrom( mstate, msdata )
importFrom( MASS, mvrnorm, ginv )
importFrom( survival, clogit, coxph, Surv, survfit )
importFrom( mgcv, gam )
importFrom( numDeriv, hessian )
importFrom( Matrix, nearPD )
importFrom( zoo, na.locf )
importFrom("grDevices", "gray", "rainbow", "adjustcolor", "dev.cur")
importFrom("graphics", "abline", "arrows", "axis", "box", "layout",
"lines", "locator", "matlines", "matplot", "matpoints",
"mtext", "par", "plot", "plot.new", "plot.window", "points",
"polygon", "rect", "rug", "segments", "strheight",
"strwidth", "text")
importFrom("stats", ".getXlevels", "AIC", "addmargins", "anova", "approx",
"ave", "as.formula", "binomial", "coef", "complete.cases",
"contr.sum", "dpois", "fisher.test", "fitted", "formula",
"gaussian", "glm", "is.empty.model", "lm", "make.link",
"median", "model.extract", "model.matrix", "model.offset",
"model.response", "nlm", "pchisq", "pnorm", "poisson",
"predict", "predict.lm", "qnorm", "qt", "quantile",
"rpois", "runif", "termplot", "update", "vcov",
"weighted.mean", "xtabs")
importFrom("utils", "flush.console", "str")
# register S3 methods
S3method( print, Icens)
S3method( summary, Icens)
S3method( print, floated)
S3method( plot, apc)
S3method( lines, apc)
S3method( plot, Lexis)
S3method( plot, pState)
S3method( lines, pState)
S3method( points, Lexis)
S3method( lines, Lexis)
S3method( PY.ann, Lexis)
S3method( merge, Lexis)
S3method( subset, Lexis)
S3method( subset, stacked.Lexis)
S3method( "[", Lexis)
S3method( cbind, Lexis)
S3method( rbind, Lexis)
S3method( print, Lexis)
S3method( summary, Lexis)
S3method( print, summary.Lexis)
S3method( transform, Lexis)
S3method( transform, stacked.Lexis)
S3method( levels, Lexis)
S3method( nid, Lexis)
S3method( nid, default)
S3method( Relevel, Lexis)
S3method( Relevel, factor)
S3method( Relevel, default)
S3method( factorize, Lexis)
S3method( factorize, default)
S3method( addCov, Lexis)
S3method( addDrug, Lexis)
S3method( stack, Lexis)
S3method( tmat, Lexis)
S3method( boxes, Lexis)
S3method( boxes, matrix)
S3method( boxes, MS)
S3method( msdata, Lexis)
S3method( etm, Lexis)
S3method( AaJ, Lexis)
S3method( print, mh)
S3method( print, LCa)
S3method( summary, LCa)
S3method( predict, LCa)
S3method( plot, LCa)
S3method( print, stat.table)
S3method( print, clogistic)
S3method( coef, clogistic)
S3method( vcov, clogistic)
S3method( as.Date, cal.yr)