https://github.com/cran/sbioPN
Tip revision: cb9bccd9cb9d3b21276ae307fb246f69810e9c43 authored by Roberto Bertolusso on 15 March 2014, 00:00:00 UTC
version 1.1.0
version 1.1.0
Tip revision: cb9bccd
sbioPN-package.Rd
\name{a) sbioPN package}
\alias{sbioPN-package}
\docType{package}
\title{Simulation of deterministic and stochastic biochemical reaction
networks with spatial effects using Petri Nets}
\description{
sbioPN is a package of C functions that can be used to simulate
time-dependent evolution of biochemical reaction networks with spatial
effects. The model
is defined as a place/transition Petri Net, which is close to how
biochemical reactions are defined. The model can be either
deterministically solved using an explicit Runge Kutta Dormand Prince
45 method, simulated using two highly optimized variants of the
stochastic simulation algorithm, or as a deterministic/stochastic
hybrid, according to the Haseltine and Rawlings' algorithm. The library has been optimized for
speed and flexibility.
bioPN has been tested only on 64 bits machines, relying on integers of
64 bits. The behavior on 32 bits architectures is untested and not supported.
}
\details{
\tabular{ll}{
Package: \tab sbioPN\cr
Type: \tab Package\cr
Version: \tab 1.1.0\cr
Date: \tab 2014-03-15\cr
License: \tab GPL (>=2)\cr
}
}
\author{
Roberto Bertolusso and Marek Kimmel
Maintainer: Roberto Bertolusso <rbertolusso@rice.edu>
}