https://github.com/cran/unmarked
Tip revision: 0e9915b1bbee346e4c283f39772af69032684e39 authored by Ken Kellner on 09 January 2024, 10:20:02 UTC
version 1.4.1
version 1.4.1
Tip revision: 0e9915b
computeMPLElambdas.Rd
\name{computeMPLElambda}
\alias{computeMPLElambda}
\title{Compute the penalty weight for the MPLE penalized likelihood method}
\usage{computeMPLElambda(formula, data, knownOcc=numeric(0), starts,
method="BFGS",engine=c("C", "R"))}
\arguments{
\item{formula}{Double right-hand side formula describing covariates of
detection and occupancy in that order.}
\item{data}{An \code{\link{unmarkedFrameOccu}} object}
\item{knownOcc}{Vector of sites that are known to be occupied. These
should be supplied as row numbers of the y matrix, eg, c(3,8) if
sites 3 and 8 were known to be occupied a priori.}
\item{starts}{Vector of parameter starting values.}
\item{method}{Optimization method used by \code{\link{optim}}.}
\item{engine}{Either "C" or "R" to use fast C++ code or native R
code during the optimization.}
}
\description{This function computes the weight for the MPLE penalty of Moreno & Lele (2010). }
\details{
See \code{\link{occuPEN}} for details and examples.
}
\value{The computed lambda.}
\references{
Moreno, M. and S. R. Lele. 2010. Improved estimation of site occupancy
using penalized likelihood. Ecology 91: 341-346.
}
\author{Rebecca A. Hutchinson}
\seealso{\code{\link{unmarked}}, \code{\link{unmarkedFrameOccu}},
\code{\link{occu}}, \code{\link{occuPEN}}, \code{\link{occuPEN_CV}},
\code{\link{nonparboot}}}
\keyword{models}