https://github.com/ctlab/phantasus
Tip revision: 352afd17e53dcc6d6682988d722127ba8a2190bd authored by Alexey Sergushichev on 29 March 2024, 23:37:48 UTC
Skipping absent file when generating counts index
Skipping absent file when generating counts index
Tip revision: 352afd1
NAMESPACE
# Generated by roxygen2: do not edit by hand
export(generatePreloadedSession)
export(getES)
export(getGDS)
export(getGSE)
export(getPhantasusConf)
export(read.gct)
export(reparseCachedESs)
export(servePhantasus)
export(setupPhantasus)
export(write.gct)
import(Biobase)
import(GEOquery)
import(Rook)
import(ccaPP)
import(data.table)
import(edgeR)
import(ggplot2)
import(grid)
import(gtable)
import(htmltools)
import(httpuv)
import(jsonlite)
import(limma)
import(opencpu)
import(rhdf5)
import(stats)
import(svglite)
importFrom(AnnotationDbi,columns)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,loadDb)
importFrom(AnnotationDbi,mapIds)
importFrom(AnnotationDbi,species)
importFrom(fgsea,fgseaMultilevel)
importFrom(fgsea,plotEnrichment)
importFrom(ggplot2,ggtitle)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,svg)
importFrom(methods,new)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(utils,download.file)
importFrom(utils,getFromNamespace)
importFrom(utils,head)
importFrom(utils,object.size)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)