https://github.com/cyang235/LncADeep
Tip revision: 2b374e0d6af820ee4b0ddcf812f147f96caa0994 authored by cyang235 on 04 June 2018, 16:26:57 UTC
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Tip revision: 2b374e0
6204_release_23_mrmr.out
You have specified parameters: threshold=mu+/-0.20*sigma #fea=110 selection method=MID #maxVar=10000 #maxSample=12408
Target classification variable (#1 column in the input data) has name=class entropy score=1.000
*** MaxRel features ***
Order Fea Name Score
1 536 eee 0.258
2 549 ddd 0.191
3 537 eed 0.143
4 398 aad 0.136
5 574 fdc 0.134
6 356 ffe 0.131
7 502 dad 0.121
8 305 fbb 0.120
9 541 eec 0.115
10 557 cgf 0.112
11 431 cde 0.109
12 319 bgb 0.099
13 278 bde 0.098
14 531 add 0.093
15 551 dcg 0.091
16 306 fba 0.091
17 420 fca 0.090
18 280 abb 0.089
19 591 bcb 0.087
20 419 bdg 0.086
21 287 cgc 0.083
22 275 cfb 0.080
23 503 dae 0.079
24 507 dab 0.077
25 379 bae 0.077
26 355 fff 0.076
27 434 cda 0.075
28 597 bca 0.075
29 290 dcc 0.073
30 411 efa 0.073
31 366 ceb 0.072
32 535 ada 0.071
33 390 dfe 0.069
34 339 afd 0.069
35 359 ffb 0.068
36 438 dbc 0.067
37 504 daf 0.067
38 519 cca 0.066
39 538 eeg 0.066
40 285 abg 0.066
41 308 fbf 0.065
42 330 def 0.064
43 410 bee 0.064
44 313 fed 0.064
45 371 gfc 0.064
46 545 dda 0.063
47 407 bef 0.063
48 532 ade 0.062
49 344 afb 0.062
50 283 abe 0.058
51 288 dce 0.057
52 534 adc 0.057
53 274 cfe 0.057
54 257 edb 0.056
55 353 egd 0.056
56 527 gdf 0.055
57 444 bfc 0.053
58 418 aba 0.052
59 334 gcb 0.052
60 573 fda 0.052
61 529 adf 0.052
62 368 dac 0.051
63 289 dcb 0.051
64 345 afc 0.051
65 555 cgd 0.050
66 472 baa 0.050
67 463 gbc 0.049
68 517 ccg 0.049
69 580 bcd 0.048
70 307 fbg 0.048
71 543 ddc 0.047
72 456 gee 0.047
73 263 ede 0.045
74 311 fef 0.045
75 271 cff 0.045
76 428 abf 0.044
77 421 fcb 0.044
78 550 dcf 0.043
79 349 ega 0.043
80 378 aec 0.043
81 501 cab 0.042
82 436 cdc 0.042
83 539 eef 0.042
84 322 bgf 0.041
85 365 cec 0.041
86 560 aca 0.041
87 481 fge 0.040
88 373 gff 0.040
89 583 cbb 0.040
90 331 deg 0.039
91 391 dfd 0.039
92 265 fac 0.039
93 558 acc 0.038
94 266 faa 0.038
95 413 efc 0.037
96 576 fde 0.036
97 569 eae 0.036
98 482 fgf 0.035
99 304 fbc 0.035
100 361 ceg 0.035
101 553 cgb 0.034
102 484 fga 0.034
103 258 edc 0.033
104 589 cbe 0.033
105 520 ccc 0.033
106 521 ccb 0.032
107 582 bcf 0.032
108 442 dbg 0.032
109 341 aff 0.031
110 269 fad 0.031
*** mRMR features ***
Order Fea Name Score
1 536 eee 0.258
2 549 ddd 0.091
3 551 dcg 0.053
4 319 bgb 0.049
5 356 ffe 0.031
6 538 eeg 0.030
7 574 fdc 0.040
8 541 eec 0.031
9 285 abg 0.031
10 431 cde 0.035
11 419 bdg 0.026
12 537 eed 0.030
13 373 gff 0.026
14 287 cgc 0.026
15 420 fca 0.030
16 398 aad 0.031
17 591 bcb 0.028
18 527 gdf 0.026
19 305 fbb 0.028
20 502 dad 0.026
21 353 egd 0.027
22 306 fba 0.025
23 290 dcc 0.023
24 289 dcb 0.023
25 344 afb 0.020
26 278 bde 0.022
27 288 dce 0.017
28 417 efg 0.017
29 355 fff 0.016
30 456 gee 0.015
31 371 gfc 0.014
32 280 abb 0.014
33 484 fga 0.014
34 557 cgf 0.013
35 349 ega 0.013
36 482 fgf 0.012
37 454 geg 0.012
38 334 gcb 0.012
39 366 ceb 0.011
40 463 gbc 0.012
41 379 bae 0.010
42 556 cgg 0.010
43 275 cfb 0.009
44 361 ceg 0.009
45 503 dae 0.009
46 117 CCGT 0.007
47 307 fbg 0.007
48 545 dda 0.008
49 529 adf 0.008
50 517 ccg 0.008
51 532 ade 0.006
52 308 fbf 0.007
53 376 gfe 0.006
54 531 add 0.006
55 339 afd 0.006
56 526 gde 0.006
57 519 cca 0.005
58 447 bfg 0.005
59 646 length_ratio 0.005
60 411 efa 0.006
61 351 egf 0.004
62 359 ffb 0.005
63 297 ggb 0.005
64 214 AGCC 0.004
65 390 dfe 0.005
66 257 edb 0.004
67 187 CGTC 0.003
68 597 bca 0.003
69 494 gag 0.003
70 191 GTTC 0.002
71 444 bfc 0.002
72 272 cfg 0.002
73 53 ACTA 0.002
74 410 bee 0.002
75 407 bef 0.002
76 513 dgd 0.002
77 133 TCGT 0.001
78 345 afc 0.002
79 24 GAAC 0.001
80 434 cda 0.002
81 180 TATC 0.001
82 438 dbc 0.001
83 17 TAGC 0.001
84 320 bgd 0.001
85 274 cfe 0.001
86 573 fda 0.001
87 131 CTCG 0.001
88 150 ATTG 0.001
89 169 TGAC 0.001
90 283 abe 0.001
91 123 TGGA 0.000
92 209 GAGT 0.000
93 330 def 0.000
94 33 ATAC 0.000
95 483 fgg 0.000
96 576 fde 0.000
97 220 TTGA 0.000
98 271 cff 0.001
99 252 TCCG 0.000
100 507 dab 0.001
101 190 GTTA -0.000
102 534 adc 0.000
103 623 2mer_3 -0.000
104 337 gcg -0.000
105 313 fed -0.000
106 96 GATA -0.000
107 265 fac -0.000
108 350 egg -0.000
109 66 CTCT -0.000
110 580 bcd -0.000
*** This program and the respective minimum Redundancy Maximum Relevance (mRMR)
algorithm were developed by Hanchuan Peng <hanchuan.peng@gmail.com>for
the paper
"Feature selection based on mutual information: criteria of
max-dependency, max-relevance, and min-redundancy,"
Hanchuan Peng, Fuhui Long, and Chris Ding,
IEEE Transactions on Pattern Analysis and Machine Intelligence,
Vol. 27, No. 8, pp.1226-1238, 2005.