https://github.com/cyang235/LncADeep
Tip revision: 2b374e0d6af820ee4b0ddcf812f147f96caa0994 authored by cyang235 on 04 June 2018, 16:26:57 UTC
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Tip revision: 2b374e0
6204_release_31_mrmr.out
You have specified parameters: threshold=mu+/-0.20*sigma #fea=110 selection method=MID #maxVar=10000 #maxSample=12408
Target classification variable (#1 column in the input data) has name=class entropy score=1.000
*** MaxRel features ***
Order Fea Name Score
1 536 eee 0.258
2 549 ddd 0.183
3 398 aad 0.137
4 574 fdc 0.134
5 537 eed 0.133
6 305 fbb 0.125
7 502 dad 0.121
8 356 ffe 0.121
9 541 eec 0.115
10 431 cde 0.109
11 591 bcb 0.101
12 531 add 0.094
13 278 bde 0.092
14 420 fca 0.089
15 319 bgb 0.088
16 551 dcg 0.087
17 306 fba 0.087
18 280 abb 0.086
19 545 dda 0.085
20 503 dae 0.083
21 419 bdg 0.080
22 355 fff 0.080
23 275 cfb 0.078
24 379 bae 0.078
25 366 ceb 0.078
26 290 dcc 0.076
27 287 cgc 0.075
28 507 dab 0.074
29 411 efa 0.074
30 359 ffb 0.074
31 434 cda 0.072
32 390 dfe 0.071
33 597 bca 0.070
34 535 ada 0.069
35 308 fbf 0.068
36 344 afb 0.067
37 538 eeg 0.067
38 529 adf 0.066
39 339 afd 0.063
40 285 abg 0.063
41 557 cgf 0.063
42 519 cca 0.063
43 504 daf 0.062
44 407 bef 0.062
45 532 ade 0.061
46 410 bee 0.061
47 313 fed 0.061
48 371 gfc 0.061
49 438 dbc 0.061
50 330 def 0.060
51 353 egd 0.059
52 534 adc 0.058
53 573 fda 0.057
54 288 dce 0.055
55 289 dcb 0.054
56 472 baa 0.054
57 283 abe 0.054
58 345 afc 0.053
59 274 cfe 0.052
60 527 gdf 0.052
61 444 bfc 0.051
62 271 cff 0.050
63 334 gcb 0.050
64 555 cgd 0.049
65 418 aba 0.049
66 368 dac 0.048
67 378 aec 0.047
68 307 fbg 0.047
69 263 ede 0.047
70 257 edb 0.046
71 517 ccg 0.046
72 421 fcb 0.046
73 456 gee 0.045
74 580 bcd 0.045
75 463 gbc 0.044
76 373 gff 0.044
77 543 ddc 0.044
78 311 fef 0.044
79 428 abf 0.043
80 436 cdc 0.042
81 583 cbb 0.042
82 481 fge 0.040
83 582 bcf 0.040
84 365 cec 0.040
85 550 dcf 0.040
86 266 faa 0.040
87 331 deg 0.039
88 391 dfd 0.039
89 560 aca 0.039
90 265 fac 0.039
91 539 eef 0.039
92 349 ega 0.037
93 482 fgf 0.037
94 501 cab 0.037
95 569 eae 0.036
96 322 bgf 0.036
97 304 fbc 0.035
98 553 cgb 0.035
99 361 ceg 0.035
100 413 efc 0.035
101 558 acc 0.034
102 321 bge 0.033
103 258 edc 0.033
104 269 fad 0.032
105 588 cbd 0.032
106 576 fde 0.032
107 417 efg 0.032
108 484 fga 0.032
109 521 ccb 0.032
110 367 cea 0.031
*** mRMR features ***
Order Fea Name Score
1 536 eee 0.258
2 549 ddd 0.087
3 551 dcg 0.049
4 319 bgb 0.040
5 356 ffe 0.027
6 574 fdc 0.032
7 538 eeg 0.029
8 541 eec 0.034
9 591 bcb 0.035
10 285 abg 0.031
11 431 cde 0.032
12 419 bdg 0.026
13 398 aad 0.026
14 306 fba 0.025
15 373 gff 0.024
16 287 cgc 0.026
17 537 eed 0.026
18 353 egd 0.027
19 305 fbb 0.030
20 502 dad 0.027
21 290 dcc 0.027
22 420 fca 0.026
23 344 afb 0.023
24 527 gdf 0.022
25 289 dcb 0.020
26 417 efg 0.018
27 355 fff 0.020
28 545 dda 0.020
29 288 dce 0.019
30 280 abb 0.019
31 371 gfc 0.015
32 484 fga 0.014
33 482 fgf 0.014
34 278 bde 0.015
35 379 bae 0.014
36 334 gcb 0.012
37 366 ceb 0.011
38 556 cgg 0.011
39 529 adf 0.010
40 456 gee 0.011
41 349 ega 0.011
42 454 geg 0.010
43 308 fbf 0.010
44 463 gbc 0.010
45 359 ffb 0.010
46 361 ceg 0.009
47 531 add 0.009
48 117 CCGT 0.008
49 275 cfb 0.009
50 307 fbg 0.007
51 503 dae 0.007
52 517 ccg 0.006
53 351 egf 0.006
54 297 ggb 0.006
55 390 dfe 0.006
56 532 ade 0.006
57 376 gfe 0.006
58 339 afd 0.005
59 447 bfg 0.004
60 411 efa 0.005
61 45 TAAA 0.004
62 519 cca 0.005
63 214 AGCC 0.004
64 526 gde 0.004
65 646 length_ratio 0.003
66 494 gag 0.003
67 191 GTTC 0.003
68 407 bef 0.004
69 597 bca 0.003
70 87 AGGT 0.002
71 573 fda 0.003
72 345 afc 0.002
73 410 bee 0.003
74 320 bgd 0.002
75 272 cfg 0.002
76 131 CTCG 0.002
77 434 cda 0.002
78 17 TAGC 0.002
79 55 TCTC 0.001
80 265 fac 0.001
81 159 TTTC 0.001
82 150 ATTG 0.001
83 444 bfc 0.001
84 274 cfe 0.001
85 53 ACTA 0.001
86 513 dgd 0.001
87 438 dbc 0.001
88 483 fgg 0.000
89 1 GTAC 0.000
90 271 cff 0.000
91 123 TGGA 0.000
92 257 edb 0.001
93 252 TCCG 0.000
94 534 adc 0.001
95 24 GAAC 0.000
96 507 dab -0.000
97 169 TGAC -0.000
98 91 TTCC -0.000
99 180 TATC -0.000
100 313 fed 0.000
101 283 abe -0.000
102 639 G_pos -0.000
103 52 TCTG -0.000
104 337 gcg -0.000
105 224 CACT -0.000
106 472 baa -0.000
107 111 GCCT -0.000
108 263 ede -0.000
109 350 egg -0.000
110 330 def -0.000
*** This program and the respective minimum Redundancy Maximum Relevance (mRMR)
algorithm were developed by Hanchuan Peng <hanchuan.peng@gmail.com>for
the paper
"Feature selection based on mutual information: criteria of
max-dependency, max-relevance, and min-redundancy,"
Hanchuan Peng, Fuhui Long, and Chris Ding,
IEEE Transactions on Pattern Analysis and Machine Intelligence,
Vol. 27, No. 8, pp.1226-1238, 2005.