# peakC

Methods for studying the spatial organization of the genome, such as 4C or Capture-C, have become more common. Here we provide an R package that enables non-parametric peak calling for one-vs-all 'C' methods called peakC.

## Getting Started

These instructions will allow you to install peakC on your local machine.

### Prerequisites

You need The following software and packages to install and run peakC:

```
R (any recent version)
isotone package (from CRAN)
devtools (for installation from github, not required for running the package)
```

### Installing

By far the easiest is to install peakC directly from GitHub. The following command will enable installation using devtools.

```
library(devtools)
install_github("deWitLab/peakC")
```