https://github.com/fiji/AnalyzeSkeleton
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README.md
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AnalyzeSkeleton
===============
This plugin tags all pixel/voxels in a skeleton image and then counts all its junctions, triple and quadruple points and branches, and measures their average and maximum length. The tags are shown in a new window displaying every tag in a different color. You can find it under `Plugins`>`Skeleton`>`Analyze Skeleton (2D/3D)`.

For further details, please see the:
- documentation http://fiji.sc/AnalyzeSkeleton
- publication: http://www3.interscience.wiley.com/journal/123322233/abstract
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