https://github.com/finkelsteinlab/fylm
Tip revision: 6587be28c3c90a6f888f66d34960d0768c055dd5 authored by jim on 09 October 2015, 15:50:48 UTC
fixed output and fluorescence problems
fixed output and fluorescence problems
Tip revision: 6587be2
Dockerfile
FROM ubuntu:14.04
MAINTAINER Jim Rybarski jim@rybarski.com
RUN apt-get update && apt-get install -y \
git \
gcc \
gfortran \
build-essential \
python2.7 \
python2.7-dev \
python-pip \
python-virtualenv \
liblapack-dev \
libblas-dev \
libatlas-dev \
tk \
tk-dev \
python-tk \
mencoder \
libhdf5-dev \
libfftw3-dev \
libfreeimage3 \
libfreeimage-dev
COPY . /opt/
RUN pip install Cython
RUN pip install numpy
RUN pip install scipy
RUN pip install numexpr
RUN pip install -r /opt/requirements.txt
RUN pip install -r /opt/external_requirements.txt
WORKDIR /opt/nd2reader
RUN python setup.py install
WORKDIR /opt/
RUN mkdir -p /var/log
RUN touch /var/log/fylm.log
RUN touch /var/log/fylm_error.log
RUN chmod -R 777 /var/log
CMD /bin/bash