https://github.com/fjruizruano/ngs-protocols
Tip revision: 39a091d1fa569a7fc717ac73c4b3de07f0a1204d authored by fjruizruano on 03 August 2023, 11:48:27 UTC
adding gfa2fas.py and extract_gfa.py
adding gfa2fas.py and extract_gfa.py
Tip revision: 39a091d
fasta_sequence_len.py
#!/usr/bin/python
import sys
from Bio import SeqIO
print "Usage: fasta_sequence_len.py FastaFile"
try:
file = sys.argv[1]
except:
file = raw_input("Introduce FASTA file: ")
data = SeqIO.parse(open(file), "fasta")
w = open(file+".len", "w")
for s in data:
w.write("%s\t%s\n" % (str(s.id), len(str(s.seq))))
w.close()