Package: CountClust
Type: Package
Title: Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models
Version: 1.6.3
Date: 2021-01-15
Authors@R: c(
    person("Kushal", "Dey", email = "kkdey@uchicago.edu", role = c("aut","cre")),
    person("Joyce", "Hsiao", email = "joyce.hsiao1@gmail.com", role = "aut"),
    person("Matthew", "Stephens", email = "stephens999@gmail.com", role ="aut"))
Maintainer: Kushal Dey <kkdey@uchicago.edu>
Description: Fits grade of membership models (GoM, also known as admixture models) to cluster RNA-seq gene expression count data, identifies characteristic genes driving cluster memberships, and provides a visual summary of the cluster memberships.
Depends:
    R (>= 3.4),
    ggplot2 (>= 2.1.0)
URL: https://github.com/kkdey/CountClust
License: GPL (>= 2)
LazyData: true
Encoding: UTF-8
Imports: 
    slam, 
    maptpx, 
    plyr(>= 1.7.1), 
    cowplot, 
    gtools, 
    flexmix, 
    picante,
    limma, 
    parallel, 
    reshape2, 
    stats, 
    utils, 
    graphics, 
    grDevices, 
    Rtsne, 
    mapplots, 
    RColorBrewer
Suggests: 
    knitr, 
    kableExtra, 
    BiocStyle, 
    Biobase, 
    roxygen2, 
    devtools, 
    xtable
VignetteBuilder: knitr
biocViews: 
    RNASeq, 
    GeneExpression, 
    Clustering, 
    Sequencing, 
    StatisticalMethod, 
    Software, 
    Visualization
RoxygenNote: 6.1.1