https://github.com/kpalin/EEL
Tip revision: c0cd936bedca30564088c8aeb8f43ebe4e05421f authored by Kimmo Palin on 07 November 2012, 13:23:26 UTC
Fixed a variable format clash which sometimes caused core dumps.
Fixed a variable format clash which sometimes caused core dumps.
Tip revision: c0cd936
makeRandom.py
#!/usr/bin/python2.2
from random import shuffle
a,c,g,t=0.2,0.3,0.3,0.2
n=50000
s=["A"]*int(n*a)+["C"]*int(n*c)+["G"]*int(n*g)+["T"]*int(n*t)
shuffle(s)
s="".join(s)
fout=open("random.fa","w")
fout.write(">Random Sequence with %.2f %.2f %.2f %.2f of A C G T\n"%(a,c,g,t))
lineLen=70
for i in range(0,len(s),lineLen):
fout.write(s[i:i+lineLen]+"\n")
fout.close()