https://github.com/kpalin/EEL
Tip revision: c0cd936bedca30564088c8aeb8f43ebe4e05421f authored by Kimmo Palin on 07 November 2012, 13:23:26 UTC
Fixed a variable format clash which sometimes caused core dumps.
Fixed a variable format clash which sometimes caused core dumps.
Tip revision: c0cd936
testMd.lyhyt.aln.gff
### lambda=2.000000 mu=0.500000 nu=1.000000 xi=1.000000 Nucleotides per rotation=10.400000 time=390.51
ENSG00000134323 malign CisModule 4147 4585 192.29 . . Target "ENSMUSG00000037169"; Start 2471; End 2883; Strand .; Frame .; CM 1
ENSMUSG00000037169 malign CisModule 2471 2883 192.29 . . Target "ENSG00000134323"; Start 4147; End 4585; Strand .; Frame .; CM 1
ENSG00000134323 malign MZF1-4.pfm 4147 4152 39.77 + . CM 1 MW 9.94356 COL 0
ENSMUSG00000037169 malign MZF1-4.pfm 2471 2476 39.77 + . CM 1 MW 9.94356 COL 0
ENSG00000134323 malign tcf4.pfm 4216 4224 10.05 - . CM 1 MW 10.4902 COL 1
ENSMUSG00000037169 malign tcf4.pfm 2541 2549 10.05 - . CM 1 MW 10.4169 COL 1
ENSG00000134323 malign SOX17.pfm 4242 4250 37.20 + . CM 1 MW 11.2115 COL 2
ENSMUSG00000037169 malign SOX17.pfm 2561 2569 37.20 + . CM 1 MW 11.6589 COL 2
ENSG00000134323 malign Sox-5.pfm 4291 4297 28.53 + . CM 1 MW 11.8646 COL 3
ENSMUSG00000037169 malign Sox-5.pfm 2600 2606 28.53 + . CM 1 MW 11.8646 COL 3
ENSG00000134323 malign Hunchback.pfm 4312 4321 31.69 - . CM 1 MW 11.2552 COL 4
ENSMUSG00000037169 malign Hunchback.pfm 2627 2636 31.69 - . CM 1 MW 9.47279 COL 4
ENSG00000134323 malign Thing1-E47.pfm 4466 4475 -27.17 + . CM 1 MW 11.2132 COL 5
ENSMUSG00000037169 malign Thing1-E47.pfm 2745 2754 -27.17 + . CM 1 MW 9.28943 COL 5
ENSG00000134323 malign HMG-IY.pfm 4504 4519 19.24 - . CM 1 MW 11.9387 COL 6
ENSMUSG00000037169 malign HMG-IY.pfm 2812 2827 19.24 - . CM 1 MW 13.2615 COL 6
ENSG00000134323 malign Broadc4.pfm 4561 4571 15.92 + . CM 1 MW 9.338 COL 7
ENSMUSG00000037169 malign Broadc4.pfm 2851 2861 15.92 + . CM 1 MW 9.17664 COL 7
ENSG00000134323 malign SOX17.pfm 4577 4585 37.06 - . CM 1 MW 11.3075 COL 8
ENSMUSG00000037169 malign SOX17.pfm 2875 2883 37.06 - . CM 1 MW 11.3075 COL 8
ENSG00000134323 malign CisModule 4440 4740 132.38 . . Target "ENSMUSG00000037169"; Start 584; End 787; Strand .; Frame .; CM 2
ENSMUSG00000037169 malign CisModule 584 787 132.38 . . Target "ENSG00000134323"; Start 4440; End 4740; Strand .; Frame .; CM 2
ENSG00000134323 malign hb.pfm 4440 4450 41.36 - . CM 2 MW 10.7937 COL 0
ENSMUSG00000037169 malign hb.pfm 584 594 41.36 - . CM 2 MW 9.88749 COL 0
ENSG00000134323 malign hb.pfm 4503 4513 13.64 + . CM 2 MW 9.12302 COL 1
ENSMUSG00000037169 malign hb.pfm 636 646 13.64 + . CM 2 MW 9.9734 COL 1
ENSG00000134323 malign hb.pfm 4514 4524 45.61 - . CM 2 MW 11.727 COL 2
ENSMUSG00000037169 malign hb.pfm 648 658 45.61 - . CM 2 MW 11.8841 COL 2
ENSG00000134323 malign SOX17.pfm 4577 4585 8.90 - . CM 2 MW 11.3075 COL 3
ENSMUSG00000037169 malign SOX17.pfm 677 685 8.90 - . CM 2 MW 10.1708 COL 3
ENSG00000134323 malign hb.pfm 4706 4716 -19.96 + . CM 2 MW 9.54083 COL 4
ENSMUSG00000037169 malign hb.pfm 760 770 -19.96 + . CM 2 MW 10.2005 COL 4
ENSG00000134323 malign Broadc1.pfm 4727 4740 42.83 - . CM 2 MW 11.2243 COL 5
ENSMUSG00000037169 malign Broadc1.pfm 774 787 42.83 - . CM 2 MW 13.8646 COL 5
ENSG00000134323 malign CisModule 2611 2647 130.27 . . Target "ENSMUSG00000037169"; Start 3107; End 3142; Strand .; Frame .; CM 3
ENSMUSG00000037169 malign CisModule 3107 3142 130.27 . . Target "ENSG00000134323"; Start 2611; End 2647; Strand .; Frame .; CM 3
ENSG00000134323 malign Irf-1.pfm 2611 2622 39.51 + . CM 3 MW 9.8776 COL 0
ENSMUSG00000037169 malign Irf-1.pfm 3107 3118 39.51 + . CM 3 MW 9.8776 COL 0
ENSG00000134323 malign Broadc3.pfm 2623 2633 39.48 + . CM 3 MW 9.60383 COL 1
ENSMUSG00000037169 malign Broadc3.pfm 3119 3129 39.48 + . CM 3 MW 10.138 COL 1
ENSG00000134323 malign hb.pfm 2637 2647 51.27 - . CM 3 MW 13.4072 COL 2
ENSMUSG00000037169 malign hb.pfm 3132 3142 51.27 - . CM 3 MW 12.9907 COL 2
