https://github.com/lhdo/GEDDplot
Tip revision: 4696f766d8ea2f7b722c792660e3fdf9cdaecf62 authored by Long H. Do on 01 July 2015, 15:12:07 UTC
Changes to be committed: added script to make GEDD figures and some sample data files from CuffDiff
Changes to be committed: added script to make GEDD figures and some sample data files from CuffDiff
Tip revision: 4696f76
README.md
# GEDDplot
Author: Long H. Do (long.h.do@gmail.com)
This script takes as input .diff files produced by CuffDiff to produce plots that search for GEDDs
Requires R (runs Rscript version) and the preprocesCore package from R Bioconductor for the quantile normalizaton
To install preprocessCore:
source("http://bioconductor.org/biocLite.R")
biocLite("preprocessCore")
usage: ./thisscript cuffDiffSample1.diff cuffDiffSample2.diff
output: spearman.pdf file in the current directory
