https://github.com/seqan/seqan
Tip revision: 45fa07bacd0c55eb83a8a77ea3d48a8197a5daa0 authored by Enrico Seiler on 28 March 2024, 18:40:09 UTC
Merge pull request #2514 from smehringer/main
Merge pull request #2514 from smehringer/main
Tip revision: 45fa07b
README.md
# SeqAn - The Library for Sequence Analysis
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| **NOTE <br> [SeqAn3 is out and hosted in a different repository](https://github.com/seqan/seqan3)** |
|:----------------------------------------------------------------------------------------------------:|
| We recommend using SeqAn3 for new applications. |
## What Is SeqAn?
SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.
Our library applies a unique generic design that guarantees high performance, generality, extensibility, and integration with other libraries.
SeqAn is easy to use and simplifies the development of new software tools with a minimal loss of performance.
## License
The SeqAn library itself, the tests and demos are licensed under the very permissive 3-clause BSD License.
The licenses for the applications themselves can be found in the LICENSE files.
## Prerequisites
Older compiler versions might work but are neither supported nor tested.
### Linux, macOS, FreeBSD
* GCC ≥ 11
* Clang/LLVM ≥ 15
* Intel oneAPI C++ Compiler 2024.0.2 (IntelLLVM)
### Windows
* Visual C++ ≥ 17.0 / Visual Studio ≥ 2022
### Architecture support
* Intel/AMD platforms, including optimisations for modern instruction sets (`POPCNT`, `SSE4`, `AVX2`, `AVX512`)
* All Debian release architectures supported, including most ARM and all PowerPC platforms.
### Build system
* To build tests, demos, and official SeqAn applications you also need CMake ≥ 3.12.
Some official applications might have additional requirements or only work on a subset of platforms.
## Documentation Resources
* [Getting Started](https://seqan.readthedocs.io/en/main/Tutorial/GettingStarted)
* [Manual](https://seqan.readthedocs.io/en/main)
* [Tutorial](https://seqan.readthedocs.io/en/main/index.html#tutorials)
* [How-Tos](https://seqan.readthedocs.io/en/main/Tutorial/HowTo)
* [API Documentation (stable)](https://docs.seqan.de/seqan/main/)
## Contact
* [Mailing List](https://lists.fu-berlin.de/listinfo/seqan-dev#subscribe)
* [GitHub Project (issues, source code)](https://github.com/seqan/seqan)