https://github.com/simkind/Patch-clamp-analysis
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Tip revision: 1732ada9c8b7f1432fe3fd494fa00a27e29425ff authored by simkind on 16 March 2024, 19:13:22 UTC
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Tip revision: 1732ada
ADPend.m

function [output] = ADPend(data,si,bl,FAHPstart_time)
    FAHPstart_idx = FAHPstart_time/(si/1000);
	FAHPstart_idx = str2double(sprintf('%16.f',FAHPstart_idx));

    numconsecreturn = 10/(si/1000);
    returnADPbelowblidx = find(data(FAHPstart_idx:end) <= bl); % find data points below baseline after FAHPstart_idx
    if ~isempty(returnADPbelowblidx) % if there are points below
        returnADPdiffbtwn = diff(returnADPbelowblidx); % if consecutive bins are below threshold, diff should be 1 for each
        returnADPpossible = [];
        counter = 1;
        while isempty(returnADPpossible)
            if sum(returnADPdiffbtwn(counter:counter+numconsecreturn-1)) == numconsecreturn
                returnADPpossible = counter;
            end
            counter = counter + 1;
            if counter >= length(returnADPdiffbtwn)-numconsecreturn
                break
            end
        end
        if ~isempty(returnADPpossible) % if there is ADP end point that meets criteria
            ADPend_time = FAHPstart_idx+returnADPbelowblidx(returnADPpossible);
        else % if there isn't an AHP end point
            ADPend_time = length(data);
        end
        ADPend_amplitude = data(ADPend_time);
        ADPduration = ADPend_time - FAHPstart_idx;
        ADP_AUC = trapz(abs(data(FAHPstart_idx:ADPend_time)-bl)); % area under the curve using trapezoidal numerical integration
        
        output.ADPend_time = ADPend_time*(si/1000);
        output.ADPend_idx = ADPend_time;
        output.ADPend_amplitude = ADPend_amplitude;
        output.ADPduration = ADPduration*(si/1000);
        output.ADP_AreaUnderCurve = (ADP_AUC*(si/1000))/1000;
    else
        output.ADPend_idx = length(data);
        output.ADPend_time = output.ADPend_idx*(si/1000);
        output.ADPend_amplitude = data(output.ADPend_idx);
        output.ADPduration = output.ADPend_time - FAHPstart_time;
        output.ADP_AreaUnderCurve = ((trapz(abs(data(FAHPstart_idx:output.ADPend_idx))))*(si/1000))/1000;
    end
end
 
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