https://github.com/simkind/Patch-clamp-analysis
Tip revision: 1732ada9c8b7f1432fe3fd494fa00a27e29425ff authored by simkind on 16 March 2024, 19:13:22 UTC
Add files via upload
Add files via upload
Tip revision: 1732ada
save_APanalysis.m
% Results should be struct containing sweeps
function [Results] = save_APanalysis(Results,filename)
[Results] = bracket2nan(Results); % convert empty brackets into NaN
label = {'ABF File','Sweep','Spike Number','Baseline (mV)','Spike Times (ms)',...
'Spike Amplitude (mV)','Spike Threshold Time (ms)','Spike Threshold (mV)',...
'Spike 1/2 Width-Baseline (ms)','Spike 1/2 Width-Threshold (ms)',...
'FastAHP Time (ms)','FastAHP Voltage(mV)','ADPpeak Time (ms)','ADPpeak Amplitude(mV)',...
'ADPend Time (ms)','ADPend Amplitude (mV)','ADP Duration (ms)','ADP AUC (mv/s)',...
'AHPstart Time (ms)','AHPpeak Time (ms)','AHPpeak Amplitude (mV)',...
'AHPend Time (ms)','AHPend Amplitude (mV)','AHP duration (ms)','AHP AUC (mv/s)',...
'AHPtau Return Time (ms)','AHP Tau (ms)','AHPtau Amplitude (mV)'};
writethis = [];
for i = 1:length(Results) % for each sweep
numspikes = Results(i).num_spikes;
sweep = num2cell(i);
if numspikes == 1
s = 1;
else
s = NaN;
end
writethistemp = [];
writethistemp = [cellstr(filename), sweep,s, num2cell(Results(i).baseline_potential),...
num2cell(Results(i).peak_times), num2cell(Results(i).peak_to_baseline),num2cell(Results(i).threshold_time),...
num2cell(Results(i).threshold_amplitude),num2cell(Results(i).SpikeWidth_Baseline),num2cell(Results(i).SpikeWidth_Threshold),...
num2cell(Results(i).FastAHP_Time), num2cell(Results(i).FastAHP_Voltage)];
AHPstuff = NaN(1,16);
AHPstuff = [Results(i).ADPpeak_time, Results(i).ADPpeak_idx, Results(i).ADPend_time, Results(i).ADPend_amplitude,...
Results(i).ADPduration, Results(i).ADP_AreaUnderCurve,...
Results(i).AHPstart_time, Results(i).AHPpeak_negative_time, Results(i).AHPpeak_negative_amplitude,...
Results(i).AHPend_time,Results(i).AHPend_amplitude,Results(i).AHPduration,...
Results(i).AHP_AreaUnderCurve, Results(i).Tau_time, Results(i).Tau_duration,Results(i).Tau_amplitude];
writethistemp = [writethistemp, num2cell(AHPstuff)];
writethis = [writethis; writethistemp];
end
writethiswithlabel = [label; writethis];
Table = writethiswithlabel;
xlswrite(sprintf('%s APanalysis.xlsx',filename),writethiswithlabel)
save(sprintf('%s APanalysis.mat',filename),'Results','Table')
end