https://github.com/soccin/S1Seq
Tip revision: d20bd0842b704a575239c45f4df717293501b888 authored by Nicholas D. Socci on 16 October 2016, 18:16:31 UTC
Added MEMSIZE for mouse mapping removed -We
Added MEMSIZE for mouse mapping removed -We
Tip revision: d20bd08
getUniqueMaps.sh
#!/bin/bash
SDIR="$( cd "$( dirname "$0" )" && pwd )"
INPUT=$1
OUTPUT=$2
samtools view -h $INPUT | egrep "(NH:i:1[^0-9]|^@)" | samtools view -bS - >$OUTPUT
samtools index $OUTPUT
