https://github.com/sorgerlab/cycif
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Tip revision: 214d60f5c35ea5cf65f1bb27c19d1caaae9db0de authored by Jerry Lin on 05 May 2019, 03:22:41 UTC
A3&A4 scripts: processing & quantify Ashlar tiff
Tip revision: 214d60f
CycIF_importcsv.m
function ResultsTable = CycIF_importcvs(filename, startRow, endRow)
%IMPORTFILE Import numeric data from a text file as a matrix.
%   RESULTSTMA34 = IMPORTFILE(FILENAME) Reads data from text file FILENAME
%   for the default selection.
%
%   RESULTSTMA34 = IMPORTFILE(FILENAME, STARTROW, ENDROW) Reads data from
%   rows STARTROW through ENDROW of text file FILENAME.
%
% Example:
%   ResultsTMA34 = importfile('Results_TMA34.csv', 2, 236289);
%
%    See also TEXTSCAN.

% Auto-generated by MATLAB on 2016/08/25 14:45:43

%% Initialize variables.
delimiter = ',';
if nargin<=2
    startRow = 2;
    endRow = inf;
end

%% Format string for each line of text:
%   column1: double (%f)
%	column2: text (%q)
%   column3: double (%f)
%	column4: double (%f)
%   column5: double (%f)
%	column6: double (%f)
%   column7: double (%f)
%	column8: double (%f)
%   column9: double (%f)
%	column10: double (%f)
%   column11: double (%f)
%	column12: double (%f)
%   column13: double (%f)
%	column14: double (%f)
%   column15: double (%f)
%	column16: double (%f)
%   column17: double (%f)
%	column18: double (%f)
%   column19: double (%f)
%	column20: double (%f)
%   column21: double (%f)
%	column22: double (%f)
%   column23: double (%f)
%	column24: double (%q)
%   column25: double (%q)
%	column26: double (%f)
%   column27: double (%f)
%	column28: double (%f)
%   column29: double (%f)
%	column30: double (%f)
%   column31: double (%f)
%	column32: double (%f)
%   column33: double (%f)
%	column34: double (%f)
%   column35: double (%f)
% For more information, see the TEXTSCAN documentation.
formatSpec = '%f%q%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%f%q%q%f%f%f%f%f%f%f%f%f%f%[^\n\r]';

%% Open the text file.
fileID = fopen(filename,'r');

%% Read columns of data according to format string.
% This call is based on the structure of the file used to generate this
% code. If an error occurs for a different file, try regenerating the code
% from the Import Tool.
dataArray = textscan(fileID, formatSpec, endRow(1)-startRow(1)+1, 'Delimiter', delimiter, 'EmptyValue' ,NaN,'HeaderLines', startRow(1)-1, 'ReturnOnError', false);
for block=2:length(startRow)
    frewind(fileID);
    dataArrayBlock = textscan(fileID, formatSpec, endRow(block)-startRow(block)+1, 'Delimiter', delimiter, 'EmptyValue' ,NaN,'HeaderLines', startRow(block)-1, 'ReturnOnError', false);
    for col=1:length(dataArray)
        dataArray{col} = [dataArray{col};dataArrayBlock{col}];
    end
end

%% Close the text file.
fclose(fileID);

%% Post processing for unimportable data.
% No unimportable data rules were applied during the import, so no post
% processing code is included. To generate code which works for
% unimportable data, select unimportable cells in a file and regenerate the
% script.

%% Create output variable
ResultsTable= table(dataArray{1:end-1}, 'VariableNames', {'VarName1','Label','Area','Mean','StdDev','Min','Max','X','Y','XM','YM','Perim','BX','BY','Width','Height','Major','Minor','Angle','Circ','Feret','IntDen','Median','Skew','Kurt','VarName26','RawIntDen','Slice','FeretX','FeretY','FeretAngle','MinFeret','AR','Round','Solidity'});

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