FROM streptomyces/ripdock-egn:latest
# FROM bioperl/bioperl
MAINTAINER Govind Chandra <govind.chandra@jic.ac.uk>
# ENV DEBIAN_FRONTEND noninteractive
# ripdock-egn

# WORKDIR /home/work
# RUN rm -rf rodeo2
# RUN git clone https://github.com/the-mitchell-lab/rodeo2.git
# RUN mkdir -p /home/work/sqlite
# RUN mkdir -p /home/work/pfamscan

WORKDIR /home/work
RUN rm -rf ripper
RUN git clone https://github.com/streptomyces/ripper.git
WORKDIR /home/work/ripper
RUN git checkout master

WORKDIR /home/work
RUN cp ripper/ripper_run.sh ripper/minitest.txt ripper/local.conf ./
RUN cp ripper/postprocess.sh ripper/rodconf.pl ./
RUN cp ripper/pna.sh ./

# RUN rm meme*.gz
RUN ln -sf rodeo2/confs ./
# ENV PATH="/usr/local/libexec/meme-5.1.0:${PATH}"

# docker rmi 25905b3b863c
# docker build --no-cache -f df2 -t streptomyces/ripdock-egn .
# docker push streptomyces/ripdock-egn:latest