https://github.com/teerjk/VarSifter
Tip revision: 7e57e5857b08f5253f28e96477fc211f67a0ffea authored by Jamie K. Teer on 27 April 2020, 14:42:41 UTC
-Documentation updates to point to github.
-Documentation updates to point to github.
Tip revision: 7e57e58
snpEFF.vs.json
{
"main": {
"format": "snpEFF",
"columnKey": "EFF"
},
"multidelim": ",",
"data": {
"singledelim": "\\(|\\|",
"type": 0,
"type_allowed": [
"SPLICE_SITE_ACCEPTOR",
"SPLICE_SITE_DONOR",
"START_LOST",
"EXON_DELETED",
"FRAME_SHIFT",
"STOP_GAINED",
"STOP_LOST",
"NON_SYNONYMOUS_CODING",
"CODON_CHANGE",
"CODON_INSERTION",
"CODON_CHANGE_PLUS_CODON_INSERTION",
"CODON_DELETION",
"CODON_CHANGE_PLUS_CODON_DELETION",
"UTR_5_DELETED",
"UTR_3_DELETED",
"SYNONYMOUS_START",
"NON_SYNONYMOUS_START",
"START_GAINED",
"SYNONYMOUS_CODING",
"SYNONYMOUS_STOP",
"NON_SYNONYMOUS_STOP",
"UTR_5_PRIME",
"UTR_3_PRIME",
"UPSTREAM",
"DOWNSTREAM",
"REGULATION"
],
"Gene_name": 5
}
}