# LSDBS-mpi
###Large Scale Biology Sequence Alignments on Xeon-Phi based clusters

LSBDS-mpi is developed as the extension to clusters of our previous work, the LSDBS. 

##Citation

Our paper is still under submission.

###Related Papers

H. Lan, W. Liu*, B. Schmidt, and B. Wang: Accelerating Large-Scale Biological Database Search on Xeon Phi-based Neo-Heterogeneous Architectures, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2015), Washington D.C., USA, November 2015.

XSW: Accelerating Biological Database Search on Xeon Phi
Lipeng Wang, Yuandong Chan, Xiaohui Duan, Haidong Lan, Xiangxu Meng, and Weiguo Liu.
The 28th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2014), Phoenix,USA, May, 2014.

##Usage

We provide binaries compiled with ICC 15.0.0 on CENTOS 6.4. MPSS 3.2.1-1 or later and Composer XE 2015 are recommended to build runtime environment. The MPI library used is Intel(R) MPI Library for Linux* OS, Version 5.0 Update 1.

Please refer to the README file with respect to the application for detailed usages.

##Contacts

Please contact Weiguo,Liu ( weiguo.liu@sdu.edu.cn) for support. We welcome any bug reporting and improvement suggestions.