https://github.com/zhanxw/anno
Tip revision: 6ae6cd1f24c980522cc7c3df63af43cf0b568ead authored by zhanxw on 18 February 2016, 20:29:42 UTC
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Tip revision: 6ae6cd1
priority.epact.txt
# Priority file
# * higher priority is listed before low priority
# large strucutre variant
StructuralVariation
# indels
Stop_Loss
Start_Gain
Start_Loss
Frameshift /* Indel length is not divisible by 3 */
CodonGain /* Insertion length is divisible by 3 */
CodonLoss /* Deletion length is divisible by 3 */
CodonRegion /* Just say the variant is in the Coding Region used in Structrual Varition*/
Insertion
Deletion
# single variants
Essential_Splice_Site
Normal_Splice_Site
Nonsense
Missense
Silent
Utr5
Utr3
Exon
Intron
Upstream
Downstream
SNV /*SNV contains the following 6 types it appears when there is no reference.*/
# not important
Noncoding
# not import
Intergenic
# Monomorphic
Monomorphic