https://github.com/ctlab/phantasus
Tip revision: f315c84ab007cd560ee96266aab5f6b093d8314d authored by Alexey Sergushichev on 28 August 2024, 23:12:08 UTC
more fixes
more fixes
Tip revision: f315c84
DESCRIPTION
Package: phantasus
Title: Visual and interactive gene expression analysis
Version: 1.25.4
Authors@R: c(
person("Maxim", "Kleverov", role = "aut"),
person("Daria", "Zenkova", role = "aut"),
person("Vladislav", "Kamenev", role = "aut"),
person("Margarita", "Sablina", role = "ctb"),
person("Maxim", "Artyomov", role = "aut"),
person("Alexey", "Sergushichev", email = "alsergbox@gmail.com", role = c("aut", "cre")))
Description:
Phantasus is a web-application for visual and interactive gene expression analysis.
Phantasus is based on Morpheus – a web-based software for heatmap visualisation
and analysis, which was integrated with an R environment via OpenCPU API.
Aside from basic visualization and filtering methods, R-based methods such
as k-means clustering, principal component analysis or differential expression analysis
with limma package are supported.
URL: https://alserglab.wustl.edu/phantasus
BugReports: https://github.com/ctlab/phantasus/issues
Depends: R (>= 4.3)
biocViews: GeneExpression, GUI, Visualization, DataRepresentation, Transcriptomics,
RNASeq, Microarray, Normalization, Clustering, DifferentialExpression,
PrincipalComponent, ImmunoOncology
Imports: ggplot2, protolite, Biobase, GEOquery, Rook, htmltools,
httpuv, jsonlite, limma, edgeR, opencpu, assertthat, methods, httr, rhdf5,
utils, parallel, stringr, fgsea (>= 1.9.4), svglite, gtable, stats,
Matrix, pheatmap, scales, ccaPP, grid, grDevices,
AnnotationDbi, DESeq2, data.table, curl, apeglm, tidyr,
config (>= 0.3.2),
rhdf5client (>= 1.25.1),
yaml, fs,
phantasusLite,
XML
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Suggests: testthat, BiocStyle, knitr, rmarkdown,
org.Hs.eg.db, org.Mm.eg.db
VignetteBuilder: knitr
NeedsCompilation: no
Config/build/copy-method: link