https://github.com/sanger-pathogens/gubbins
Tip revision: c39c39f405ad671e0427455e83f635f0b62d570b authored by nickjcroucher on 25 January 2018, 14:18:19 UTC
Replaced RAxML sequence reconstruction with python joint ancestral reconstruction
Replaced RAxML sequence reconstruction with python joint ancestral reconstruction
Tip revision: c39c39f
| File | Mode | Size |
|---|---|---|
| data | ||
| check_branch_sequences.c | -rw-r--r-- | 9.3 KB |
| check_branch_sequences.h | -rw-r--r-- | 967 bytes |
| check_gubbins.c | -rw-r--r-- | 8.7 KB |
| check_gubbins.h | -rw-r--r-- | 946 bytes |
| check_parse_phylip.c | -rw-r--r-- | 3.4 KB |
| check_parse_phylip.h | -rw-r--r-- | 949 bytes |
| check_snp_searching.c | -rw-r--r-- | 19.8 KB |
| check_snp_searching.h | -rw-r--r-- | 958 bytes |
| check_snp_sites.c | -rw-r--r-- | 12.4 KB |
| check_snp_sites.h | -rw-r--r-- | 1023 bytes |
| check_vcf_parsing.c | -rw-r--r-- | 503 bytes |
| check_vcf_parsing.h | -rw-r--r-- | 944 bytes |
| helper_methods.c | -rw-r--r-- | 2.8 KB |
| helper_methods.h | -rw-r--r-- | 1.0 KB |
| makefile | -rw-r--r-- | 455 bytes |
| run_all_tests.c | -rw-r--r-- | 794 bytes |
| run_tests | -rwxr-xr-x | 41.1 KB |
