https://github.com/mailund/IMCoalHMM
- HEAD
- refs/heads/ILS_patterns
- refs/heads/develop
- refs/heads/feature/ILS_model
- refs/heads/feature/admixture_model
- refs/heads/feature/caching_CTMCs
- refs/heads/feature/cleaner_transition_computations
- refs/heads/feature/documentation
- refs/heads/feature/emission_probabilities
- refs/heads/feature/epochs_mle
- refs/heads/feature/factor_isolation_hmm
- refs/heads/feature/isolation-model
- refs/heads/feature/isolation_migration_simulations
- refs/heads/feature/isolation_model_script
- refs/heads/feature/likelihood_on_list_of_chunks
- refs/heads/feature/log_all_chains_in_mcmcmc
- refs/heads/feature/maximum_likelihood_estimation
- refs/heads/feature/mcmc
- refs/heads/feature/mcmcmc
- refs/heads/feature/merge_minimal_state_space_classes
- refs/heads/feature/migration_model
- refs/heads/feature/mini-ziphmm
- refs/heads/feature/options_for_temperature_in_mcmcmc
- refs/heads/feature/output_prior_and_likelihood
- refs/heads/feature/parallelize_through_computations
- refs/heads/feature/posterior_decoding
- refs/heads/feature/profile_likelihood
- refs/heads/feature/psmc_like_variation_in_coalescence_rate
- refs/heads/feature/psmc_simulations
- refs/heads/feature/refactor_matrix_computations
- refs/heads/feature/refactor_model_design
- refs/heads/feature/refactor_parallisation
- refs/heads/feature/refactor_shared_code_between_models
- refs/heads/feature/sample_from_priors
- refs/heads/feature/simulation_study
- refs/heads/feature/variable_migration_mcmc
- refs/heads/feature/variable_migration_model
- refs/heads/feature/variable_migration_simulations
- refs/heads/feature/variable_popsize_migration_model
- refs/heads/hotfix/emissions
- refs/heads/hotfix/heuristic-optimisers
- refs/heads/hotfix/math_range_error
- refs/heads/master
- refs/heads/mcmc_svend
- refs/heads/release/0.5.1
- refs/heads/release/0.6
- refs/heads/release/0.6.1
- refs/heads/release/0.6.2
- refs/heads/release/0.6.3
- refs/heads/release/initial_migration_model
- refs/heads/test
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CTMC construction described
| File | Mode | Size |
|---|---|---|
| documentation | ||
| examples | ||
| scripts | ||
| simulations | ||
| src | ||
| .gitignore | -rw-r--r-- | 946 bytes |
| LICENSE | -rw-r--r-- | 17.6 KB |
| README.md | -rw-r--r-- | 2.3 KB |
| ez_setup.py | -rw-r--r-- | 11.3 KB |
| setup.py | -rw-r--r-- | 1.1 KB |
