https://github.com/ESMValGroup/ESMValTool
Tip revision: 49c72d1da34a9eb826a7ff12b6257be87481c6f3 authored by Bouwe Andela on 06 August 2018, 14:45:50 UTC
Install cis with conda, PyPI version is outdated
Install cis with conda, PyPI version is outdated
Tip revision: 49c72d1
setup.py
#!/usr/bin/env python
"""ESMValTool installation script"""
# This script only installs dependencies available on PyPI
#
# Dependencies that need to be installed some other way (e.g. conda):
# - ncl
# - iris
# - python-stratify
# - basemap
import os
import re
import sys
from setuptools import Command, setup
from esmvaltool._version import __version__
PACKAGES = [
'esmvaltool',
]
REQUIREMENTS = {
# Installation script (this file) dependencies
'setup': [
'setuptools_scm',
],
# Installation dependencies
# Use with pip install . to install from source
'install': [
'basemap',
'cis',
'cartopy',
'cdo',
'cf_units',
'cython',
# 'scitools-iris', # Only iris 2 is on PyPI
'matplotlib',
'netCDF4',
'numba',
'numpy',
'pillow',
'psutil',
'pyyaml',
'shapely',
'six',
'stratify',
'yamale',
],
# Test dependencies
# Execute 'python setup.py test' to run tests
'test': [
'easytest',
# TODO: add dummydata package, see environment.yml
'mock',
'nose',
'pycodestyle',
'pytest',
'pytest-cov',
'pytest-html',
'pytest-metadata>=1.5.1',
],
# Development dependencies
# Use pip install -e .[develop] to install in development mode
'develop': [
'isort',
'prospector[with_pyroma]',
'pycodestyle',
'pydocstyle',
'pylint',
'sphinx',
'yamllint',
'yapf',
],
}
def discover_python_files(paths, ignore):
"""Discover Python files"""
def _ignore(path):
"""Return True if `path` should be ignored, False otherwise."""
return any(re.match(pattern, path) for pattern in ignore)
for path in sorted(set(paths)):
for root, _, files in os.walk(path):
if _ignore(path):
continue
for filename in files:
filename = os.path.join(root, filename)
if (filename.lower().endswith('.py')
and not _ignore(filename)):
yield filename
class CustomCommand(Command):
"""Custom Command class"""
def install_deps_temp(self):
"""Try to temporarily install packages needed to run the command."""
if self.distribution.install_requires:
self.distribution.fetch_build_eggs(
self.distribution.install_requires)
if self.distribution.tests_require:
self.distribution.fetch_build_eggs(self.distribution.tests_require)
class RunTests(CustomCommand):
"""Class to run tests and generate reports."""
user_options = []
def initialize_options(self):
"""Do nothing"""
def finalize_options(self):
"""Do nothing"""
def run(self):
"""Run tests and generate a coverage report."""
self.install_deps_temp()
import pytest
version = sys.version_info[0]
report_dir = 'test-reports/python{}'.format(version)
errno = pytest.main([
'tests',
'esmvaltool', # for doctests
'--doctest-modules',
'--cov=esmvaltool',
'--cov-report=term',
'--cov-report=html:{}/coverage_html'.format(report_dir),
'--cov-report=xml:{}/coverage.xml'.format(report_dir),
'--junit-xml={}/report.xml'.format(report_dir),
'--html={}/report.html'.format(report_dir),
])
sys.exit(errno)
class RunLinter(CustomCommand):
"""Class to run a linter and generate reports."""
user_options = []
def initialize_options(self):
"""Do nothing"""
def finalize_options(self):
"""Do nothing"""
def run(self):
"""Run prospector and generate a report."""
check_paths = PACKAGES + [
'setup.py',
'tests',
'util',
]
ignore = [
'doc/',
]
# try to install missing dependencies and import prospector
try:
from prospector.run import main
except ImportError:
# try to install and then import
self.distribution.fetch_build_eggs(['prospector[with_pyroma]'])
from prospector.run import main
self.install_deps_temp()
# run linter
# change working directory to package root
package_root = os.path.abspath(os.path.dirname(__file__))
os.chdir(package_root)
# write command line
files = discover_python_files(check_paths, ignore)
sys.argv = ['prospector']
sys.argv.extend(files)
# run prospector
errno = main()
sys.exit(errno)
with open('README.md') as readme:
setup(
name='ESMValTool',
version=__version__,
description='Earth System Models eValuation Tool',
long_description=readme.read(),
url='https://www.esmvaltool.org',
download_url='https://github.com/ESMValGroup/ESMValTool',
license='Apache License, Version 2.0',
classifiers=[
'Environment :: Console',
'License :: OSI Approved :: Apache Software License',
'Programming Language :: Python',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3.6',
],
packages=PACKAGES,
# Include all version controlled files
include_package_data=True,
setup_requires=REQUIREMENTS['setup'],
install_requires=REQUIREMENTS['install'],
tests_require=REQUIREMENTS['test'],
extras_require={
'develop': REQUIREMENTS['develop'] + REQUIREMENTS['test']
},
entry_points={
'console_scripts': [
'esmvaltool = esmvaltool._main:run',
'prepare_observations = esmvaltool.utils.prepare_observations:_main',
'nclcodestyle = esmvaltool.utils.nclcodestyle.nclcodestyle:_main',
],
},
cmdclass={
'test': RunTests,
'lint': RunLinter,
},
zip_safe=False,
)