https://github.com/cran/lsmeans
Tip revision: 07d2c021a5b2fa3d77434ef72edc2b314055d11c authored by Russell Lenth on 04 December 2015, 21:43:52 UTC
version 2.21
version 2.21
Tip revision: 07d2c02
NAMESPACE
# Namespace for lsmeans package
# Imports
# From default packages (new req from CRAN, July 2015)
importFrom("graphics", "pairs")
importFrom("stats", "as.formula", "coef", "complete.cases", "confint", "cov", "cov2cor", "delete.response", "deriv", "family", "lm", "make.link", "model.frame", "model.matrix", "na.omit", "na.pass", "p.adjust", "p.adjust.methods", "pchisq", "pf", "poly", "predict", "pt", "ptukey", "qf", "qt", "qtukey", "reformulate", "terms", "uniroot", "update", "vcov")
importFrom("utils", "head", "installed.packages", "str")
importFrom("nlme", "fixef")
# Others
import(methods)
import(mvtnorm)
import(estimability)
# 'requireNamespace' block below allows me to put multcomp in
# Imports instead of Depends.
if (requireNamespace("multcomp", quietly = TRUE)) {
importFrom(multcomp, cld, glht, modelparm)
export(cld) # need user to see it even if multcomp not loaded
S3method(cld, ref.grid)
S3method(cld, lsm.list)
S3method(glht, lsmlf)
S3method(glht, ref.grid)
S3method(modelparm, lsmwrap)
}
if (requireNamespace("plyr", quietly = TRUE)) {
importFrom(plyr, alply)
}
if (requireNamespace("coda", quietly = TRUE)) {
importFrom(coda, as.mcmc)
export(as.mcmc)
S3method(as.mcmc, ref.grid)
}
# Visible exports
exportPattern("*.lsmc") #all contrast fcns
export(
as.glht,
contrast,
defaults,
get.lsm.option,
get.pmm.option,
lsm,
lsm.basis,
lsmeans,
lsmeans.character,
lsmobj,
lsmip,
lsm.options,
lstrends,
pmm,
pmmeans,
pmmobj,
pmmip,
pmm.options,
pmtrends,
###rbind, # my own version that overrides one in methods
recover.data,
ref.grid,
regrid,
test
)
# hidden functions of possible use to other package developers
export(
.all.vars,
.aovlist.dffun,
.diag,
.get.offset,
.my.vcov
)
# S3 methods for recover.data and lsm.basis that are needed by other packages
S3method(recover.data, call)
S3method(recover.data, aovlist)
S3method(lsm.basis, aovlist)
S3method(recover.data, lm)
S3method(lsm.basis, lm)
S3method(recover.data, lme)
S3method(lsm.basis, lme)
S3method(recover.data, merMod)
S3method(lsm.basis, merMod)
S3method(lsm.basis, mlm) # recover.data for mlm uses lm
# S3 methods -
# For clarity, I'm showing them all
# but commenting out the ones used only interally
S3method("[", ref.grid)
S3method(as.glht, ref.grid)
S3method(as.glht, lsm.list)
S3method(confint, ref.grid)
S3method(confint, lsm.list)
S3method(contrast, ref.grid)
S3method(contrast,lsm.list)
#S3method(glht, lsmlf) # in namespace block above
#S3method(glht, ref.grid)
S3method(lsmeans, character)
S3method(lsmeans.character, default)
S3method(lsmeans.character, ref.grid)
S3method(lsmeans, default)
S3method(lsmeans, formula)
S3method(lsmeans, list)
S3method(lsmip, default)
#S3method(modelparm, lsmwrap) # in namespace block above
S3method(pairs, ref.grid)
S3method(pairs, lsm.list)
S3method(plot, lsmobj)
S3method(plot, summary.ref.grid)
S3method(predict, ref.grid)
S3method(print, ref.grid)
S3method(print, summary.ref.grid)
S3method(print, lsm.list)
S3method(rbind, ref.grid)
S3method(str, ref.grid)
S3method(str, lsm.list)
S3method(summary, ref.grid)
S3method(summary, glht.list)
S3method(summary, lsm.list)
S3method(test, ref.grid)
S3method(test, lsm.list)
S3method(update, ref.grid)
S3method(vcov, ref.grid)
# interim support for old lsmeans function
# removed at version 2.14
# export(.old.lsmeans)
# S3method(print, lsm)
# S3method(print, data.frame.lsm)