https://github.com/cran/lsmeans
Tip revision: 200e4b1fcaa391dcbdcfe65ae7b50aaeb84c7706 authored by Russell Lenth on 17 December 2015, 16:09:04 UTC
version 2.21-1
version 2.21-1
Tip revision: 200e4b1
NAMESPACE
# Namespace for lsmeans package
# Imports
# From default packages (new req from CRAN, July 2015)
importFrom("graphics", "pairs")
importFrom("stats", "as.formula", "coef", "complete.cases", "confint", "cov", "cov2cor", "delete.response", "deriv", "family", "lm", "make.link", "model.frame", "model.matrix", "na.omit", "na.pass", "p.adjust", "p.adjust.methods", "pchisq", "pf", "poly", "predict", "pt", "ptukey", "qf", "qt", "qtukey", "reformulate", "terms", "uniroot", "update", "vcov")
importFrom("utils", "head", "installed.packages", "str")
importFrom("nlme", "fixef")
# Others
import(methods)
import(mvtnorm)
import(estimability)
# 'requireNamespace' block below allows me to put multcomp in
# Imports instead of Depends.
if (requireNamespace("multcomp", quietly = TRUE)) {
importFrom(multcomp, cld, glht, modelparm)
export(cld) # need user to see it even if multcomp not loaded
S3method(cld, ref.grid)
S3method(cld, lsm.list)
S3method(glht, lsmlf)
S3method(glht, ref.grid)
S3method(modelparm, lsmwrap)
}
if (requireNamespace("plyr", quietly = TRUE)) {
importFrom(plyr, alply)
}
if (requireNamespace("coda", quietly = TRUE)) {
importFrom(coda, as.mcmc)
export(as.mcmc)
S3method(as.mcmc, ref.grid)
}
# Visible exports
exportPattern("*.lsmc") #all contrast fcns
export(
as.glht,
contrast,
defaults,
get.lsm.option,
get.pmm.option,
lsm,
lsm.basis,
lsmeans,
lsmeans.character,
lsmobj,
lsmip,
lsm.options,
lstrends,
pmm,
pmmeans,
pmmobj,
pmmip,
pmm.options,
pmtrends,
###rbind, # my own version that overrides one in methods
recover.data,
ref.grid,
regrid,
test
)
# hidden functions of possible use to other package developers
export(
.all.vars,
.aovlist.dffun,
.diag,
.get.offset,
.my.vcov
)
# S3 methods for recover.data and lsm.basis that are needed by other packages
S3method(recover.data, call)
S3method(recover.data, aovlist)
S3method(lsm.basis, aovlist)
S3method(recover.data, lm)
S3method(lsm.basis, lm)
S3method(recover.data, lme)
S3method(lsm.basis, lme)
S3method(recover.data, merMod)
S3method(lsm.basis, merMod)
S3method(lsm.basis, mlm) # recover.data for mlm uses lm
# S3 methods -
# For clarity, I'm showing them all
# but commenting out the ones used only interally
S3method("[", ref.grid)
S3method(as.glht, ref.grid)
S3method(as.glht, lsm.list)
S3method(confint, ref.grid)
S3method(confint, lsm.list)
S3method(contrast, ref.grid)
S3method(contrast,lsm.list)
#S3method(glht, lsmlf) # in namespace block above
#S3method(glht, ref.grid)
S3method(lsmeans, character)
S3method(lsmeans.character, default)
S3method(lsmeans.character, ref.grid)
S3method(lsmeans, default)
S3method(lsmeans, formula)
S3method(lsmeans, list)
S3method(lsmip, default)
#S3method(modelparm, lsmwrap) # in namespace block above
S3method(pairs, ref.grid)
S3method(pairs, lsm.list)
S3method(plot, lsmobj)
S3method(plot, summary.ref.grid)
S3method(predict, ref.grid)
S3method(print, ref.grid)
S3method(print, summary.ref.grid)
S3method(print, lsm.list)
S3method(rbind, ref.grid)
S3method(str, ref.grid)
S3method(str, lsm.list)
S3method(summary, ref.grid)
S3method(summary, glht.list)
S3method(summary, lsm.list)
S3method(test, ref.grid)
S3method(test, lsm.list)
S3method(update, ref.grid)
S3method(vcov, ref.grid)
# interim support for old lsmeans function
# removed at version 2.14
# export(.old.lsmeans)
# S3method(print, lsm)
# S3method(print, data.frame.lsm)