Package: ape
Version: 2.8
Date: 2011-10-22
Title: Analyses of Phylogenetics and Evolution
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
        Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
        Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre
        Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer
        Opgen-Rhein, Andrei-Alin Popescu, Klaus Schliep, Korbinian
        Strimmer, Damien de Vienne
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Depends: R (>= 2.6.0)
Suggests: gee
Imports: gee, nlme, lattice
ZipData: no
Description: ape provides functions for reading, writing, plotting, and
        manipulating phylogenetic trees, analyses of comparative data
        in a phylogenetic framework, analyses of diversification and
        macroevolution, computing distances from allelic and nucleotide
        data, reading nucleotide sequences, and several tools such as
        Mantel's test, computation of minimum spanning tree,
        generalized skyline plots, estimation of absolute evolutionary
        rates and clock-like trees using mean path lengths,
        non-parametric rate smoothing and penalized likelihood.
        Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR,
        SDM, and triangle methods, and several methods handling
        incomplete distance matrices (NJ*, BIONJ*, MVR*, and the
        corresponding triangle method).
License: GPL (>= 2)
URL: http://ape.mpl.ird.fr/
Packaged: 2011-10-22 08:39:43 UTC; paradis
Repository: CRAN
Date/Publication: 2011-10-24 14:40:07