https://github.com/Data2Dynamics/d2d
Tip revision: 62e7498b82e987ce16cc1d97e99b2e04f2f95eb3 authored by Andreas Raue on 10 December 2013, 03:12:35 UTC
Major Update: I implemented a nice way how we can save some time when parsing, writing c code and compiling the models. This is somewhat experimental. In my tests it worked fine. You can enable the new way by: ar.config.useSensiRHS = false;
Major Update: I implemented a nice way how we can save some time when parsing, writing c code and compiling the models. This is somewhat experimental. In my tests it worked fine. You can enable the new way by: ar.config.useSensiRHS = false;
Tip revision: 62e7498
| File | Mode | Size |
|---|---|---|
| EvA2 | ||
| Examples | ||
| PLE2 | ||
| arTools | ||
| pthreads-w32_2.9.1 | ||
| STRSCNE.m | -rw-r--r-- | 15.4 KB |
| arCheck.m | -rw-r--r-- | 2.6 KB |
| arChi2.m | -rw-r--r-- | 18.2 KB |
| arChi2LHS.m | -rw-r--r-- | 556 bytes |
| arChi2Test.m | -rw-r--r-- | 929 bytes |
| arChi2s.m | -rw-r--r-- | 1.3 KB |
| arClearCFiles.m | -rw-r--r-- | 300 bytes |
| arCompareFit.m | -rw-r--r-- | 2.8 KB |
| arCompareFits.m | -rw-r--r-- | 4.5 KB |
| arCompile.m | -rw-r--r-- | 7.4 KB |
| arCompileSSA.m | -rw-r--r-- | 5.0 KB |
| arComputePriors.m | -rw-r--r-- | 194 bytes |
| arConfig.m | -rw-r--r-- | 5.9 KB |
| arCovariance.m | -rw-r--r-- | 948 bytes |
| arCreateProject.m | -rw-r--r-- | 954 bytes |
| arDisturb.m | -rw-r--r-- | 420 bytes |
| arExportGenSSI.m | -rw-r--r-- | 3.9 KB |
| arExportMathematica.m | -rw-r--r-- | 3.8 KB |
| arExportMobi.m | -rw-r--r-- | 5.8 KB |
| arExportModelToDaniel.m | -rw-r--r-- | 825 bytes |
| arExportPW.m | -rw-r--r-- | 8.1 KB |
| arExportSBML.m | -rw-r--r-- | 11.8 KB |
| arExportSBML_manual.m | -rw-r--r-- | 5.7 KB |
| arExportSBML_manual_l2v4.m | -rw-r--r-- | 6.3 KB |
| arExportiVUN.m | -rw-r--r-- | 7.6 KB |
| arExtendStr.m | -rw-r--r-- | 93 bytes |
| arFiniteDifferences.m | -rw-r--r-- | 3.9 KB |
| arFiniteDifferencesGlobal.m | -rw-r--r-- | 882 bytes |
| arFit.m | -rw-r--r-- | 9.3 KB |
| arFitDyn.m | -rw-r--r-- | 309 bytes |
| arFitEvA2.m | -rw-r--r-- | 1.5 KB |
| arFitInit.m | -rw-r--r-- | 311 bytes |
| arFitLHS.m | -rw-r--r-- | 1.5 KB |
| arFitObs.m | -rw-r--r-- | 312 bytes |
| arFitPSO.m | -rw-r--r-- | 775 bytes |
| arFitPSOFkt.m | -rw-r--r-- | 123 bytes |
| arFitSingle.m | -rw-r--r-- | 305 bytes |
| arFitSome.m | -rw-r--r-- | 351 bytes |
| arFits.m | -rw-r--r-- | 3.6 KB |
| arGetMultipleParameter.m | -rw-r--r-- | 1.1 KB |
| arGetPars.m | -rw-r--r-- | 861 bytes |
| arGetVersion.m | -rw-r--r-- | 113 bytes |
| arGradAndHessian.m | -rw-r--r-- | 1.1 KB |
| arImportPW.m | -rw-r--r-- | 4.5 KB |
| arImportSBML.m | -rw-r--r-- | 10.9 KB |
| arInit.m | -rw-r--r-- | 4.0 KB |
| arInputFunctionsC.c | -rw-r--r-- | 11.8 KB |
| arInputFunctionsC.h | -rw-r--r-- | 3.3 KB |
| arLRT.m | -rw-r--r-- | 359 bytes |
| arLinReg.m | -rw-r--r-- | 1.3 KB |
| arLineMarkersAndColors.m | -rw-r--r-- | 1.4 KB |
| arLink.m | -rw-r--r-- | 16.3 KB |
| arLoad.m | -rw-r--r-- | 301 bytes |
| arLoadData.m | -rw-r--r-- | 29.2 KB |
| arLoadFilename.m | -rw-r--r-- | 461 bytes |
| arLoadModel.m | -rw-r--r-- | 19.4 KB |
| arLoadPars.m | -rw-r--r-- | 2.0 KB |
| arLogFitting.m | -rw-r--r-- | 721 bytes |
| arLogNtoN.m | -rw-r--r-- | 378 bytes |
| arLogPlotting.m | -rw-r--r-- | 306 bytes |
| arMCMC.m | -rw-r--r-- | 9.2 KB |
| arMLEDist.m | -rw-r--r-- | 1.5 KB |
| arMLEDistCompare.m | -rw-r--r-- | 4.2 KB |
| arMLEDistPlot.m | -rw-r--r-- | 3.8 KB |
| arMakeMeanAndStd.m | -rw-r--r-- | 1.3 KB |
| arMatchHistWithEmpFunction.m | -rw-r--r-- | 631 bytes |
| arMergePlot.m | -rw-r--r-- | 2.5 KB |
| arMergePlotMulti.m | -rw-r--r-- | 2.2 KB |
| arMomentODE.m | -rw-r--r-- | 878 bytes |
| arMomentODE2.m | -rw-r--r-- | 2.4 KB |
| arNLS.m | -rw-r--r-- | 8.6 KB |
| arNLSTrustTrafo.m | -rw-r--r-- | 5.8 KB |
| arNLSstep.m | -rw-r--r-- | 27.0 KB |
| arNetworkGraph.m | -rw-r--r-- | 4.1 KB |
| arNetworkGraphCompartments.m | -rw-r--r-- | 5.0 KB |
| arNtoColsAndRows.m | -rw-r--r-- | 170 bytes |
| arOptimizerTest.m | -rw-r--r-- | 4.2 KB |
| arPLE.m | -rw-r--r-- | 1.3 KB |
| arPLEConfidence.m | -rw-r--r-- | 8.7 KB |
| arPLEInit.m | -rw-r--r-- | 2.9 KB |
| arPLETrajectories.m | -rw-r--r-- | 3.5 KB |
| arPLE_direct.m | -rw-r--r-- | 3.5 KB |
| arPLErolling.m | -rw-r--r-- | 5.1 KB |
| arPPL.m | -rw-r--r-- | 10.2 KB |
| arParallelSpeedUpOptimize.m | -rw-r--r-- | 3.8 KB |
| arParallelSpeedUpTest.m | -rw-r--r-- | 1.9 KB |
| arParseModel.m | -rw-r--r-- | 45.1 KB |
| arPlot.m | -rw-r--r-- | 1.6 KB |
| arPlot3D.m | -rw-r--r-- | 636 bytes |
| arPlotChi2s.m | -rw-r--r-- | 1.1 KB |
| arPlotClockTimes.m | -rw-r--r-- | 891 bytes |
| arPlotFit.m | -rw-r--r-- | 3.6 KB |
| arPlotFits.m | -rw-r--r-- | 4.3 KB |
| arPlotMCMCChainACFs.m | -rw-r--r-- | 2.0 KB |
| arPlotMCMCChains.m | -rw-r--r-- | 2.3 KB |
| arPlotMCMCProfiles.m | -rw-r--r-- | 4.0 KB |
| arPlotMarginalized.m | -rw-r--r-- | 4.6 KB |
| arPlotMerged.m | -rw-r--r-- | 9.7 KB |
| arPlotMulti.m | -rw-r--r-- | 43.4 KB |
| arPlotPLE.m | -rw-r--r-- | 3.9 KB |
| arPlotPPL.m | -rw-r--r-- | 2.9 KB |
| arPlotPPLMulti.m | -rw-r--r-- | 7.7 KB |
| arPlotParameterHists.m | -rw-r--r-- | 970 bytes |
| arPlotParameterProfiles.m | -rw-r--r-- | 1.1 KB |
| arPlotParameters.m | -rw-r--r-- | 472 bytes |
| arPlotPriors.m | -rw-r--r-- | 1.3 KB |
| arPlotResiduals.m | -rw-r--r-- | 3.0 KB |
| arPlotS.m | -rw-r--r-- | 223 bytes |
| arPlotSRES.m | -rw-r--r-- | 4.5 KB |
| arPlotSRESERR.m | -rw-r--r-- | 4.5 KB |
| arPlotSSAnoise.m | -rw-r--r-- | 947 bytes |
| arPlotSX.m | -rw-r--r-- | 5.4 KB |
| arPlotSY.m | -rw-r--r-- | 4.4 KB |
| arPlotSYSTD.m | -rw-r--r-- | 4.4 KB |
| arPlotSample.m | -rw-r--r-- | 4.4 KB |
| arPlotScan.m | -rw-r--r-- | 4.1 KB |
| arPlotSglobal.m | -rw-r--r-- | 2.4 KB |
| arPlotV.m | -rw-r--r-- | 14.3 KB |
| arPlotX.m | -rw-r--r-- | 27.1 KB |
| arPlotY.m | -rw-r--r-- | 33.2 KB |
| arPlotter.fig | -rw-r--r-- | 4.0 KB |
| arPlotter.m | -rw-r--r-- | 7.6 KB |
| arPresentation.m | -rw-r--r-- | 51.2 KB |
| arPrint.m | -rw-r--r-- | 2.7 KB |
| arPrintChi2.m | -rw-r--r-- | 3.9 KB |
| arProfileODE.m | -rw-r--r-- | 12.6 KB |
| arQuasiSSApproximation.m | -rw-r--r-- | 3.4 KB |
| arQuasiSSApproximation2.m | -rw-r--r-- | 1.9 KB |
| arRaiseFigs.m | -rw-r--r-- | 530 bytes |
| arReport.m | -rw-r--r-- | 44.5 KB |
| arResample.m | -rw-r--r-- | 1.0 KB |
| arReset.m | -rw-r--r-- | 358 bytes |
| arSSA.m | -rw-r--r-- | 2.7 KB |
| arSSACalc.c | -rw-r--r-- | 17.5 KB |
| arSample.m | -rw-r--r-- | 2.0 KB |
| arSave.m | -rw-r--r-- | 4.4 KB |
| arSaveData.m | -rw-r--r-- | 2.3 KB |
| arSaveFit.m | -rw-r--r-- | 877 bytes |
| arSavePlots.m | -rw-r--r-- | 1.2 KB |
| arScan.m | -rw-r--r-- | 1.1 KB |
| arScanChi2s.m | -rw-r--r-- | 1.2 KB |
| arSetParallelThreads.m | -rw-r--r-- | 716 bytes |
| arSetPars.m | -rw-r--r-- | 2.2 KB |
| arShowAllFits.m | -rw-r--r-- | 402 bytes |
| arShowDataConditionStructure.m | -rw-r--r-- | 754 bytes |
| arShowParameterConditions.m | -rw-r--r-- | 1.2 KB |
| arSimu.m | -rw-r--r-- | 4.7 KB |
| arSimuCalc.c | -rw-r--r-- | 28.0 KB |
| arSimuData.m | -rw-r--r-- | 1.2 KB |
| arSimuNData.m | -rw-r--r-- | 1.4 KB |
| arSolve.m | -rw-r--r-- | 1.5 KB |
| arSolveSS.m | -rw-r--r-- | 2.1 KB |
| arSpacedAxisLimits.m | -rw-r--r-- | 1.8 KB |
| arTrackEffects.m | -rw-r--r-- | 1.6 KB |
| arTuner.fig | -rwxr-xr-x | 8.5 KB |
| arTuner.m | -rwxr-xr-x | 8.9 KB |
| arWaitbar.m | -rw-r--r-- | 3.6 KB |
| arWriteCFiles.m | -rwxr-xr-x | 30.4 KB |
| data_template.def | -rw-r--r-- | 124 bytes |
| empty.xml | -rw-r--r-- | 185 bytes |
| filled.xml | -rw-r--r-- | 1.2 KB |
| model_template.def | -rw-r--r-- | 401 bytes |
| spline.c | -rw-r--r-- | 10.1 KB |
| sundials-2.4.0.tar | -rw-r--r-- | 16.6 MB |
| sundials-2.5.0.tar | -rw-r--r-- | 16.8 MB |
| udata.h | -rw-r--r-- | 219 bytes |
