ipyrad (In development)
=======================

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Interactive assembly and analysis of RAD-seq data sets.

Tutorials
---------

Documentation is in the works_. There you can find installation instructions, 
example tutorials, and a full user guide. Much more on the way.

.. _works: http://ipyrad.readthedocs.org/en/latest/


Installation
------------
ipyrad is available through conda (and pip) with all dependencies included.


What's new?
-----------

In addition to a command line interface that will be familiar to pyrad users, ipyrad offers an additional way to interact with the data through writing Python scripts that access the ipyrad API. This provides an easier way to construct branching assembly architectures in which data sets are assembled under a number of parameter options. We also include several new analysis 
tools, including __svd4tet__, a program for fast quartet inference and super-tree 
construction (docs coming). 


License
-------
GPLv3


Contributors
------------
+ `Deren Eaton <deren.eaton@yale.edu>`_.  
+ `Isaac Overcast <isaac.overcast@gmail.com>`_.