https://github.com/AlexanderDilthey/MHC-PRG
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Tip revision: e59943adb8855532573a6c276651efad1e18a6b1 authored by Alexander Dilthey on 18 December 2018, 10:20:48 UTC
Update HLA-PRG.md
Tip revision: e59943a
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Commands
Data
Graph
GraphAligner
GraphAlignerUnique
NextGen
Util
forPaper
hash
intervalTree
moleculo
readFilter
HLA-PRG.md -rw-r--r-- 7.7 KB
HLAtypeinference.pl -rwxr-xr-x 87.4 KB
HLAtypeinference_copySimulations.pl -rwxr-xr-x 5.0 KB
HLAtypeinference_validation.pl -rwxr-xr-x 22.8 KB
LICENSE.md -rw-r--r-- 34.3 KB
LargeLocusCodeAllocation.cpp -rw-r--r-- 9.9 KB
LargeLocusCodeAllocation.h -rw-r--r-- 1.4 KB
LocusCodeAllocation.cpp -rw-r--r-- 7.9 KB
LocusCodeAllocation.h -rw-r--r-- 1.5 KB
MHC-PRG.cpp -rw-r--r-- 45.3 KB
MHC-PRG.h -rw-r--r-- 760 bytes
PaperData.md -rw-r--r-- 2.2 KB
README.md -rw-r--r-- 10.4 KB
README_otherREGIONS.txt -rw-r--r-- 12.6 KB
Utilities.cpp -rw-r--r-- 20.2 KB
Utilities.h -rw-r--r-- 3.8 KB
analyseTypesAsValidated.pl -rwxr-xr-x 2.2 KB
callOnCluster.pl -rwxr-xr-x 6.4 KB
check_graph_snp_alleles.pl -rwxr-xr-x 3.6 KB
display_graph_alignment.pl -rwxr-xr-x 2.7 KB
display_graph_fromOriginalAlignment.pl -rwxr-xr-x 11.0 KB
downsample_hla_reads.pl -rwxr-xr-x 3.3 KB
examineReads.pl -rwxr-xr-x 1.0 KB
extractReadsAlignment.pl -rwxr-xr-x 10.2 KB
hla_nom_g.txt -rwxr-xr-x 164.9 KB
hoard_commands.txt -rw-r--r-- 149 bytes
identify_alignment_nonPGF.pl -rwxr-xr-x 38.2 KB
identify_alignment_nonPGF_perSample.pl -rwxr-xr-x 36.5 KB
identify_deletions_fromPGF.pl -rwxr-xr-x 21.8 KB
inspect_pgf_alignment.pl -rwxr-xr-x 4.4 KB
makefile -rw-r--r-- 3.5 KB
nextGenInferenceVariGraph.pl -rwxr-xr-x 122.3 KB
nextGenValidationVariGraph.pl -rwxr-xr-x 29.0 KB
readCortexCoverage.pl -rwxr-xr-x 9.3 KB
reduce_coverage_hlaBAM_targetedByAmplification.pl -rwxr-xr-x 5.4 KB
simpleHLA.pm -rwxr-xr-x 5.9 KB
test.h -rw-r--r-- 2.1 KB
trimGenomeString.pl -rwxr-xr-x 1.6 KB

README.md

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