https://github.com/BradnerLab/pipeline
Tip revision: 8108e90f9adf7b403162eca5a7fb334fd8a5bed0 authored by Vanessasaurus on 18 March 2020, 15:55:41 UTC
Adding docs from wiki to docs folder (#78)
Adding docs from wiki to docs folder (#78)
Tip revision: 8108e90
| File | Mode | Size |
|---|---|---|
| annotation | ||
| bamliquidator_internal | ||
| docs | ||
| hockeysticks | ||
| .gitignore | -rw-r--r-- | 27 bytes |
| .pylintrc | -rw-r--r-- | 8.0 KB |
| .travis.yml | -rw-r--r-- | 290 bytes |
| GPL16043.py | -rwxr-xr-x | 12.3 KB |
| GPL16043.r | -rwxr-xr-x | 8.7 KB |
| GPL16043.sh | -rwxr-xr-x | 2.0 KB |
| LICENSE | -rw-r--r-- | 1.2 KB |
| README.md | -rwxr-xr-x | 456 bytes |
| RNA_SEQ_PIPELINE_README.txt | -rwxr-xr-x | 5.1 KB |
| ROSE2_META.py | -rw-r--r-- | 27.9 KB |
| ROSE2_callSuper.R | -rwxr-xr-x | 19.5 KB |
| ROSE2_geneMapper.py | -rw-r--r-- | 30.1 KB |
| ROSE2_main.py | -rwxr-xr-x | 23.9 KB |
| ROSE2_stitchOpt.R | -rw-r--r-- | 1.4 KB |
| bamPlot.R | -rwxr-xr-x | 5.5 KB |
| bamPlot.py | -rwxr-xr-x | 16.0 KB |
| bamPlotExample.sh | -rwxr-xr-x | 2.6 KB |
| bamPlot_turbo.R | -rwxr-xr-x | 12.3 KB |
| bamPlot_turbo.py | -rwxr-xr-x | 26.3 KB |
| bamTableUpdate.py | -rw-r--r-- | 5.0 KB |
| bamToGFF.py | -rwxr-xr-x | 17.4 KB |
| bamToGFFExample.sh | -rwxr-xr-x | 3.8 KB |
| bamToGFF_turbo.py | -rwxr-xr-x | 9.5 KB |
| bamliquidator_batch.py | l--------- | 64 bytes |
| callBowtie.py | -rwxr-xr-x | 10.2 KB |
| callBowtie2.py | -rw-r--r-- | 15.1 KB |
| clusterEnhancer.R | -rw-r--r-- | 14.1 KB |
| clusterEnhancer.py | -rw-r--r-- | 23.6 KB |
| commandline_template.py | -rw-r--r-- | 3.9 KB |
| dynamicEnhancer.py | -rwxr-xr-x | 28.8 KB |
| dynamicEnhancer_plot.R | -rwxr-xr-x | 4.3 KB |
| dynamicEnhancer_rank.R | -rwxr-xr-x | 2.8 KB |
| extractGuides.py | -rw-r--r-- | 6.4 KB |
| heatMapOrdered.R | -rwxr-xr-x | 4.2 KB |
| makeBamMeta.py | -rwxr-xr-x | 9.8 KB |
| normalizeRNASeq.R | -rw-r--r-- | 24.4 KB |
| pipeline.py | -rwxr-xr-x | 94.4 KB |
| pipeline_dfci.py | -rwxr-xr-x | 152.3 KB |
| pipeline_template.py | -rwxr-xr-x | 5.4 KB |
| processGeckoBam.py | -rw-r--r-- | 12.1 KB |
| pythonTemplate.py | -rwxr-xr-x | 2.1 KB |
| python_template.py | -rwxr-xr-x | 3.2 KB |
| tophatTemplate.sh | -rwxr-xr-x | 2.0 KB |
| utils.py | -rwxr-xr-x | 49.8 KB |
