https://github.com/CoBiG2/RAD_Tools
Tip revision: cf2e732c6528cf471ae75e08e51f4a1c957f5a20 authored by Francisco Pina Martins on 05 August 2022, 09:57:59 UTC
Small change to work with more than one SNP per locus
Small change to work with more than one SNP per locus
Tip revision: cf2e732
| File | Mode | Size |
|---|---|---|
| Examples | ||
| .Rhistory | -rw-r--r-- | 0 bytes |
| .gitignore | -rw-r--r-- | 27 bytes |
| .pairwise_ld.py.swp | -rw-r--r-- | 20.0 KB |
| BioGenepop.py | -rw-r--r-- | 2.0 KB |
| Demerelate_wrapper.R | -rw-r--r-- | 305 bytes |
| FDR.R | -rw-r--r-- | 1.5 KB |
| LICENSE | -rw-r--r-- | 34.3 KB |
| Loci_counter.py | -rw-r--r-- | 1.3 KB |
| Loci_filter_from_vcf.py | -rw-r--r-- | 1.2 KB |
| README.md | -rw-r--r-- | 4.8 KB |
| SpaceMix_workflow.R | -rw-r--r-- | 8.3 KB |
| VCF2phy.py | -rwxr-xr-x | 7.6 KB |
| VCF_SNP_number_matcher.py | -rw-r--r-- | 1.0 KB |
| VCF_corresponder.py | -rw-r--r-- | 1.5 KB |
| bayenv2_results_miner.py | -rw-r--r-- | 2.6 KB |
| bl_gff_2_annotation.py | -rwxr-xr-x | 2.9 KB |
| blast_tab_parser.py | -rw-r--r-- | 1.8 KB |
| compare_maps.py | -rw-r--r-- | 7.5 KB |
| compare_pairs.py | -rwxr-xr-x | 19.8 KB |
| correct_geste.py | -rw-r--r-- | 581 bytes |
| filter_loci_by_vcf.py | -rw-r--r-- | 1.8 KB |
| filter_replicates_vcf.py | -rw-r--r-- | 6.7 KB |
| geste2baypass.py | -rw-r--r-- | 1.9 KB |
| keep_central_snp.py | -rw-r--r-- | 3.8 KB |
| loci2phy.py | -rw-r--r-- | 4.2 KB |
| loci_and_vcf_to_GPhoCS.py | -rw-r--r-- | 2.5 KB |
| loci_consensus.py | -rw-r--r-- | 4.9 KB |
| oldloci2phy.py | -rw-r--r-- | 3.2 KB |
| outlier_removal.py | -rwxr-xr-x | 6.1 KB |
| pairLD.R | -rw-r--r-- | 4.1 KB |
| pairwise_ld.py | -rw-r--r-- | 5.3 KB |
| plot_structure.py | -rwxr-xr-x | 5.4 KB |
| segregating_loci_finder.py | -rw-r--r-- | 3.5 KB |
| singleton_site_remover.py | -rw-r--r-- | 2.7 KB |
| skyline_creator.py | -rwxr-xr-x | 2.1 KB |
| snp_pca.R | -rwxr-xr-x | 3.1 KB |
| snp_pca_static.R | -rwxr-xr-x | 2.1 KB |
| strcture_filter.py | -rw-r--r-- | 1.8 KB |
| struct_to_distruct.py | -rw-r--r-- | 1.4 KB |
| vcf2bcg.py | -rw-r--r-- | 4.0 KB |
| vcf2dadi.py | -rw-r--r-- | 3.2 KB |
| vcf2dapc.R | -rw-r--r-- | 1.2 KB |
| vcf2fas.py | -rw-r--r-- | 3.3 KB |
| vcf2snapp.py | -rw-r--r-- | 2.9 KB |
| vcf2spacemix.sh | -rw-r--r-- | 1.5 KB |
| vcf2treemix.py | -rw-r--r-- | 2.6 KB |
| vcf_parser.py | -rwxr-xr-x | 8.1 KB |
| vcftools_stats.py | -rwxr-xr-x | 19.7 KB |
