https://github.com/MaayanLab/Zika-RNAseq-Pipeline
History
Tip revision: fb16b322952d350aac0a20b59de5463a19aebc58 authored by Zichen Wang on 22 April 2019, 15:12:56 UTC
Added sh script for kallisto pipeline starting with fq files
Tip revision: fb16b32
File Mode Size
img
.dockerignore -rw-r--r-- 64 bytes
.gitignore -rw-r--r-- 65 bytes
Dockerfile -rw-r--r-- 1.7 KB
Dockerfile.kallisto -rw-r--r-- 1.4 KB
README.dockerhub.md -rw-r--r-- 3.3 KB
README.md -rw-r--r-- 3.0 KB
RNAseq.py -rw-r--r-- 17.7 KB
Zika.ipynb -rw-r--r-- 3.3 MB
analyze_fastq.sh -rw-r--r-- 4.7 KB
analyze_fastq_kallisto.sh -rw-r--r-- 3.8 KB
analyze_sra.sh -rw-r--r-- 5.7 KB
analyze_sra_kallisto.sh -rwxr-xr-x 4.6 KB
normalize.R -rw-r--r-- 1.6 KB
notebook.sh -rwxr-xr-x 945 bytes
plots.py -rw-r--r-- 2.6 KB
requirements.txt -rw-r--r-- 117 bytes

README.md

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