https://github.com/MaayanLab/Zika-RNAseq-Pipeline
Tip revision: fb16b322952d350aac0a20b59de5463a19aebc58 authored by Zichen Wang on 22 April 2019, 15:12:56 UTC
Added sh script for kallisto pipeline starting with fq files
Added sh script for kallisto pipeline starting with fq files
Tip revision: fb16b32
File | Mode | Size |
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img | ||
.dockerignore | -rw-r--r-- | 64 bytes |
.gitignore | -rw-r--r-- | 65 bytes |
Dockerfile | -rw-r--r-- | 1.7 KB |
Dockerfile.kallisto | -rw-r--r-- | 1.4 KB |
README.dockerhub.md | -rw-r--r-- | 3.3 KB |
README.md | -rw-r--r-- | 3.0 KB |
RNAseq.py | -rw-r--r-- | 17.7 KB |
Zika.ipynb | -rw-r--r-- | 3.3 MB |
analyze_fastq.sh | -rw-r--r-- | 4.7 KB |
analyze_fastq_kallisto.sh | -rw-r--r-- | 3.8 KB |
analyze_sra.sh | -rw-r--r-- | 5.7 KB |
analyze_sra_kallisto.sh | -rwxr-xr-x | 4.6 KB |
normalize.R | -rw-r--r-- | 1.6 KB |
notebook.sh | -rwxr-xr-x | 945 bytes |
plots.py | -rw-r--r-- | 2.6 KB |
requirements.txt | -rw-r--r-- | 117 bytes |